Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EUC40_RS05585 Genome accession   NZ_CP040336
Coordinates   1084244..1084990 (+) Length   248 a.a.
NCBI ID   WP_071712981.1    Uniprot ID   A0A7V7SAT5
Organism   Bacillus luti strain FJ     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1079244..1089990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS05555 - 1079533..1081677 (+) 2145 WP_156574010.1 HD family phosphohydrolase -
  EUC40_RS05560 ybeY 1081674..1082144 (+) 471 WP_071712978.1 rRNA maturation RNase YbeY -
  EUC40_RS05565 - 1082141..1082494 (+) 354 WP_151624754.1 diacylglycerol kinase family protein -
  EUC40_RS05570 - 1082594..1082992 (+) 399 WP_156574012.1 cytidine deaminase -
  EUC40_RS05575 era 1082985..1083890 (+) 906 WP_001080238.1 GTPase Era -
  EUC40_RS05580 - 1084067..1084210 (+) 144 WP_000883924.1 YqzL family protein -
  EUC40_RS05585 recO 1084244..1084990 (+) 747 WP_071712981.1 DNA repair protein RecO Machinery gene
  EUC40_RS05590 - 1085098..1085730 (+) 633 WP_000583758.1 helix-turn-helix transcriptional regulator -
  EUC40_RS05595 - 1085760..1086572 (+) 813 WP_000368934.1 pyruvate, water dikinase regulatory protein -
  EUC40_RS05600 - 1086986..1087234 (+) 249 WP_244322181.1 DUF188 domain-containing protein -
  EUC40_RS05605 dnaG 1087437..1089233 (+) 1797 WP_071712983.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28656.21 Da        Isoelectric Point: 8.0462

>NTDB_id=363342 EUC40_RS05585 WP_071712981.1 1084244..1084990(+) (recO) [Bacillus luti strain FJ]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=363342 EUC40_RS05585 WP_071712981.1 1084244..1084990(+) (recO) [Bacillus luti strain FJ]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAACCGAAAAGTCGGTTAGCATCAGTTTCGCAACTTATGA
CACATGGTCAGTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTACAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACGGATAAAGCGACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGAGAAGGCGGTTTTCTGTGCTCACGTCACGCTGAGCAAGATCAGTATCGTATACCAGTGGG
AGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTTGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTGTTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAGCAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7SAT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment