Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   GKC13_RS08755 Genome accession   NZ_CP046134
Coordinates   1707277..1707774 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702277..1712774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS08735 (GKC13_08855) - 1702323..1703927 (-) 1605 WP_002949230.1 CTP synthase -
  GKC13_RS08740 (GKC13_08860) rpoE 1704178..1704753 (-) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  GKC13_RS08745 (GKC13_08865) tig 1704911..1706194 (-) 1284 WP_011680653.1 trigger factor -
  GKC13_RS08750 (GKC13_08870) - 1706335..1707177 (+) 843 WP_207560153.1 mechanosensitive ion channel family protein -
  GKC13_RS08755 (GKC13_08875) comX 1707277..1707774 (-) 498 WP_002949220.1 sigma factor Regulator
  GKC13_RS08760 (GKC13_08880) - 1708081..1708170 (-) 90 Protein_1737 IS200/IS605 family transposase -
  GKC13_RS08765 (GKC13_08885) - 1708528..1708992 (+) 465 Protein_1738 transposase family protein -
  GKC13_RS08770 (GKC13_08890) - 1709252..1710442 (-) 1191 WP_011680651.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  GKC13_RS08775 (GKC13_08895) - 1710524..1710850 (-) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  GKC13_RS08780 (GKC13_08900) - 1711039..1711361 (+) 323 Protein_1741 transposase -
  GKC13_RS08785 (GKC13_08905) - 1711446..1711667 (-) 222 WP_002948904.1 DUF4649 family protein -
  GKC13_RS08790 (GKC13_08910) - 1711870..1712774 (+) 905 Protein_1743 ISL3 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=350211 GKC13_RS08755 WP_002949220.1 1707277..1707774(-) (comX) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=350211 GKC13_RS08755 WP_002949220.1 1707277..1707774(-) (comX) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.