Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   EQH22_RS09810 Genome accession   NZ_CP035258
Coordinates   1910402..1910728 (-) Length   108 a.a.
NCBI ID   WP_000738625.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901927     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1905402..1915728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH22_RS09770 (EQH22_10265) rnpA 1905420..1905791 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH22_RS10940 - 1905808..1905939 (-) 132 WP_000768904.1 hypothetical protein -
  EQH22_RS09775 (EQH22_10270) - 1905940..1907130 (-) 1191 WP_000167769.1 acetate kinase -
  EQH22_RS09780 (EQH22_10275) comYH 1907181..1908134 (-) 954 WP_000345127.1 class I SAM-dependent methyltransferase Machinery gene
  EQH22_RS09785 (EQH22_10280) - 1908195..1908789 (-) 595 Protein_1934 class I SAM-dependent methyltransferase -
  EQH22_RS09790 (EQH22_10285) comGG/cglG 1908892..1909338 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH22_RS09795 (EQH22_10290) comGF/cglF 1909316..1909777 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH22_RS09800 (EQH22_10295) comGE/cglE 1909740..1910042 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH22_RS09805 (EQH22_10300) comGD/cglD 1910005..1910409 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH22_RS09810 (EQH22_10305) comGC/cglC 1910402..1910728 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  EQH22_RS09815 (EQH22_10310) comGB/cglB 1910730..1911746 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH22_RS09820 (EQH22_10315) comGA/cglA/cilD 1911694..1912635 (-) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH22_RS09825 (EQH22_10320) - 1912710..1913075 (-) 366 WP_000286415.1 DUF1033 family protein -
  EQH22_RS09830 (EQH22_10325) - 1913226..1914284 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -
  EQH22_RS09835 (EQH22_10330) nagA 1914447..1915598 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12143.28 Da        Isoelectric Point: 10.0055

>NTDB_id=338186 EQH22_RS09810 WP_000738625.1 1910402..1910728(-) (comGC/cglC) [Streptococcus pneumoniae strain TVO_1901927]
MKKMMTFLKKAKVKAFTLVEMLVVLLIISVLFLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLDKNEDATLSKLQG
DGRITEEQVKAYNEYYTKNGGANRKVND

Nucleotide


Download         Length: 327 bp        

>NTDB_id=338186 EQH22_RS09810 WP_000738625.1 1910402..1910728(-) (comGC/cglC) [Streptococcus pneumoniae strain TVO_1901927]
ATGAAAAAAATGATGACATTCTTGAAAAAAGCTAAGGTTAAAGCTTTTACATTGGTGGAGATGTTAGTAGTCTTGCTGAT
TATCAGCGTGCTTTTCTTGCTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCAGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTGGATAAAAATGAAGATGCTACTCTGAGCAAGTTACAAGGA
GATGGGCGCATCACGGAAGAACAGGTTAAAGCTTATAATGAATACTATACTAAAAATGGAGGGGCAAATCGTAAAGTCAA
TGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

95.37

100

0.954
  comGC/cglC Streptococcus pneumoniae Rx1

92.593

100

0.926
  comGC/cglC Streptococcus pneumoniae D39

92.593

100

0.926
  comGC/cglC Streptococcus pneumoniae R6

92.593

100

0.926
  comGC/cglC Streptococcus pneumoniae TIGR4

92.593

100

0.926
  comGC/cglC Streptococcus mitis NCTC 12261

92.857

90.741

0.843
  comYC Streptococcus gordonii str. Challis substr. CH1

67.961

95.37

0.648
  comYC Streptococcus mutans UA140

62.745

94.444

0.593
  comYC Streptococcus mutans UA159

62.745

94.444

0.593
  comGC Lactococcus lactis subsp. cremoris KW2

56.863

94.444

0.537
  comYC Streptococcus suis isolate S10

64.773

81.481

0.528
  comGC Staphylococcus aureus MW2

47.674

79.63

0.38
  comGC Staphylococcus aureus N315

47.674

79.63

0.38

Multiple sequence alignment