Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EQH22_RS09780 Genome accession   NZ_CP035258
Coordinates   1907181..1908134 (-) Length   317 a.a.
NCBI ID   WP_000345127.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901927     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902181..1913134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH22_RS09755 (EQH22_10250) - 1902942..1903565 (-) 624 WP_000932635.1 hypothetical protein -
  EQH22_RS09760 (EQH22_10255) jag 1903616..1904602 (-) 987 WP_000260014.1 RNA-binding cell elongation regulator Jag/EloR -
  EQH22_RS09765 (EQH22_10260) - 1904621..1905445 (-) 825 WP_000727909.1 membrane protein insertase YidC -
  EQH22_RS09770 (EQH22_10265) rnpA 1905420..1905791 (-) 372 WP_000739246.1 ribonuclease P protein component -
  EQH22_RS10940 - 1905808..1905939 (-) 132 WP_000768904.1 hypothetical protein -
  EQH22_RS09775 (EQH22_10270) - 1905940..1907130 (-) 1191 WP_000167769.1 acetate kinase -
  EQH22_RS09780 (EQH22_10275) comYH 1907181..1908134 (-) 954 WP_000345127.1 class I SAM-dependent methyltransferase Machinery gene
  EQH22_RS09785 (EQH22_10280) - 1908195..1908789 (-) 595 Protein_1934 class I SAM-dependent methyltransferase -
  EQH22_RS09790 (EQH22_10285) comGG/cglG 1908892..1909338 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  EQH22_RS09795 (EQH22_10290) comGF/cglF 1909316..1909777 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  EQH22_RS09800 (EQH22_10295) comGE/cglE 1909740..1910042 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  EQH22_RS09805 (EQH22_10300) comGD/cglD 1910005..1910409 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  EQH22_RS09810 (EQH22_10305) comGC/cglC 1910402..1910728 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  EQH22_RS09815 (EQH22_10310) comGB/cglB 1910730..1911746 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  EQH22_RS09820 (EQH22_10315) comGA/cglA/cilD 1911694..1912635 (-) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  EQH22_RS09825 (EQH22_10320) - 1912710..1913075 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35686.85 Da        Isoelectric Point: 4.2706

>NTDB_id=338181 EQH22_RS09780 WP_000345127.1 1907181..1908134(-) (comYH) [Streptococcus pneumoniae strain TVO_1901927]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSNLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=338181 EQH22_RS09780 WP_000345127.1 1907181..1908134(-) (comYH) [Streptococcus pneumoniae strain TVO_1901927]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTGCTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATCTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGACGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTAATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment