Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MDS_RS00380 Genome accession   NC_015410
Coordinates   88407..89525 (+) Length   372 a.a.
NCBI ID   WP_013713232.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina NK-01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 83407..94525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS00360 (MDS_0071) rsmB 84332..85645 (-) 1314 WP_013713228.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MDS_RS00365 (MDS_0072) fmt 85642..86574 (-) 933 WP_013713229.1 methionyl-tRNA formyltransferase -
  MDS_RS00370 (MDS_0073) def 86630..87136 (-) 507 WP_013713230.1 peptide deformylase -
  MDS_RS00375 (MDS_0074) tsaP 87289..88326 (+) 1038 WP_013713231.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MDS_RS00380 (MDS_0075) dprA 88407..89525 (+) 1119 WP_013713232.1 DNA-processing protein DprA Machinery gene
  MDS_RS00385 (MDS_0076) - 89610..90167 (+) 558 WP_013713233.1 L-threonylcarbamoyladenylate synthase -
  MDS_RS00390 (MDS_0077) - 90243..91220 (-) 978 WP_013713234.1 NADPH:quinone reductase -
  MDS_RS00395 (MDS_0078) hemF 91368..92282 (+) 915 WP_041769641.1 oxygen-dependent coproporphyrinogen oxidase -
  MDS_RS00400 (MDS_0079) aroE 92427..93248 (+) 822 WP_013713236.1 shikimate dehydrogenase -
  MDS_RS00405 (MDS_0080) - 93254..93604 (+) 351 WP_013713237.1 DOPA 4,5-dioxygenase family protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39391.08 Da        Isoelectric Point: 7.0928

>NTDB_id=33776 MDS_RS00380 WP_013713232.1 88407..89525(+) (dprA) [Ectopseudomonas mendocina NK-01]
MPTSFSLSPTLSPAELEARLRLHSLPELGPRRFRKLLSAFDSASAALSAPASAWRALGLPAACAEPRRSEDVRERARSAL
QWLERPGQHLLMWDDPRYPALLAELADAPPLLFVAGEPSVLESPQLAMVGSRRASQPGLDNARAFARSLAGGGFVITSGL
ALGIDGAAHQGALEGDGKTVAVLGTGLQCLYPRRHVGLAARIIEQGGALVSELPLDCPPQASNFPRRNRIISGLSLGVLV
VEASPSSGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGATLVESIEHILEALRGWQTPASAPLSDASLKRVEH
PLLHLLHAAPHSTEALVQASGWPLAQVLAALTELELDGLVCNEAGRWLARNP

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=33776 MDS_RS00380 WP_013713232.1 88407..89525(+) (dprA) [Ectopseudomonas mendocina NK-01]
ATGCCTACATCCTTCTCGCTTAGCCCCACTCTTTCCCCTGCTGAGCTTGAAGCCCGCCTGCGCCTGCACTCGTTGCCGGA
ATTGGGGCCGCGACGGTTTCGCAAACTCTTGAGTGCCTTCGACAGTGCCTCGGCTGCGTTGAGTGCGCCTGCCAGTGCCT
GGCGGGCGCTGGGCTTGCCTGCCGCCTGCGCCGAGCCTCGGCGCAGTGAGGACGTCCGTGAGCGGGCGCGGTCTGCGCTG
CAGTGGCTGGAACGGCCCGGTCAACATCTGCTGATGTGGGACGATCCGCGTTACCCGGCGCTGTTGGCCGAGTTGGCCGA
CGCACCGCCGCTGCTGTTCGTGGCGGGCGAACCAAGTGTGCTGGAATCGCCGCAACTGGCCATGGTCGGTAGCCGGCGCG
CCTCGCAGCCCGGCCTGGATAACGCGCGCGCCTTTGCCCGCAGCTTGGCCGGTGGTGGCTTCGTCATCACCAGCGGGTTG
GCGTTGGGCATCGATGGTGCTGCACATCAGGGGGCGCTGGAAGGCGACGGCAAAACGGTAGCCGTGCTGGGTACTGGCCT
GCAGTGCCTGTATCCGCGACGGCATGTGGGGCTGGCTGCGCGGATCATCGAGCAGGGTGGTGCGCTGGTCTCGGAGTTGC
CGCTGGACTGTCCACCGCAGGCCAGCAACTTCCCGCGGCGCAACAGGATAATCAGCGGCCTTTCGCTGGGTGTGCTGGTG
GTCGAGGCCAGCCCTTCCAGTGGTTCGCTGATCACTGCGCGACTGGCCGCAGAGCAGGGACGTGAGGTCTATGCCATTCC
CGGTTCCATTCACCATCCTGGCGCGCGCGGCTGCCACCAACTGATTCGCGATGGCGCCACGCTGGTGGAGAGCATCGAGC
ATATTCTCGAAGCACTTCGTGGTTGGCAGACGCCGGCCTCCGCTCCTTTGTCCGATGCATCGCTGAAACGCGTCGAGCAC
CCGTTACTCCACTTGCTGCATGCTGCCCCCCATAGCACCGAGGCGTTGGTCCAGGCCAGCGGCTGGCCATTGGCGCAGGT
GCTGGCGGCTTTGACCGAGCTGGAACTCGATGGTCTGGTGTGCAACGAAGCCGGGCGTTGGCTGGCGCGCAATCCCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(83-290)

DprA winged helix domain (WHD_DprA)

(307-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

45.73

97.581

0.446
  dprA Legionella pneumophila strain ERS1305867

45.07

95.43

0.43
  dprA Acinetobacter baylyi ADP1

42.778

96.774

0.414
  dprA Vibrio cholerae strain A1552

46.341

88.172

0.409
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.341

88.172

0.409
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.385

96.237

0.379
  dprA Acinetobacter baumannii strain A118

39.828

93.817

0.374
  dprA Glaesserella parasuis strain SC1401

47.917

77.419

0.371
  dprA Acinetobacter baumannii D1279779

39.655

93.548

0.371
  dprA Haemophilus influenzae Rd KW20

48.929

75.269

0.368
  dprA Neisseria meningitidis strain C311

46.102

79.301

0.366
  dprA Neisseria meningitidis MC58

46.102

79.301

0.366
  dprA Neisseria gonorrhoeae strain FA1090

45.763

79.301

0.363
  dprA Neisseria gonorrhoeae MS11

45.424

79.301

0.36

Multiple sequence alignment