Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AVIN_RS17560 Genome accession   NC_012560
Coordinates   3900271..3901320 (-) Length   349 a.a.
NCBI ID   WP_012702372.1    Uniprot ID   M9YJV8
Organism   Azotobacter vinelandii DJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3895271..3906320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVIN_RS17545 (Avin_38530) - 3896961..3898367 (+) 1407 WP_012702369.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  AVIN_RS17550 (Avin_38540) - 3898512..3899591 (+) 1080 WP_012702370.1 LOG family protein -
  AVIN_RS17555 (Avin_38550) recX 3899792..3900259 (-) 468 WP_012702371.1 recombination regulator RecX -
  AVIN_RS17560 (Avin_38560) recA 3900271..3901320 (-) 1050 WP_012702372.1 recombinase RecA Machinery gene
  AVIN_RS17565 (Avin_38570) - 3901447..3901941 (-) 495 WP_012702373.1 CinA family protein -
  AVIN_RS17570 (Avin_38580) - 3902573..3902959 (-) 387 WP_012702374.1 hypothetical protein -
  AVIN_RS17575 (Avin_38590) - 3903357..3903971 (-) 615 WP_072432477.1 alpha/beta fold hydrolase -
  AVIN_RS17585 (Avin_38610) - 3904763..3905221 (-) 459 WP_012702376.1 Hsp20 family protein -
  AVIN_RS17590 (Avin_38620) - 3905305..3905763 (-) 459 WP_012702377.1 Hsp20 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37189.50 Da        Isoelectric Point: 5.1423

>NTDB_id=33775 AVIN_RS17560 WP_012702372.1 3900271..3901320(-) (recA) [Azotobacter vinelandii DJ]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSTIA
EAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
QHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKESDEVIGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQLGLLEKSGAWYSYQGSKIGQGKANAAKFLEDNPEVAAAVEK
SIRDQLLAAPASARPAALADEPADADLDY

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=33775 AVIN_RS17560 WP_012702372.1 3900271..3901320(-) (recA) [Azotobacter vinelandii DJ]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCGGCCTTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCGCGGTGATGCG
CATGGGCGATCACGAGCGGCAGGCGATTCCGGCCATTTCCACCGGTTCCCTGGGGCTGGACATCGCGCTCGGCATCGGCG
GCCTGCCCAAGGGGCGGATCGTCGAGATCTACGGCCCCGAATCCTCCGGCAAGACCACCCTGACCCTGTCGACCATCGCC
GAGGCTCAGAAGCAGGGTGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTCGATCCGGACTACGCCGCCAAGCTCGG
GGTGAACGTCGACGACCTCCTGGTTTCCCAGCCCGATACCGGCGAGCAGGCGCTGGAGATCACCGACATGCTGGTGCGTT
CCAACGCGGTGGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCCAAGGCGGAGATCGAGGGCGAGATGGGCGAC
CAGCACGTCGGTCTGCAGGCCCGTCTGATGTCCCAGGCCCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCAATGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGCACCGGCGCGGTGAAGGAGAGCGACGAGGTGATCGGCAGCGAG
ACCCGCGTCAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGCAT
CTACCGTAACGGTGAGATCATCGACCTCGGTGTGCAACTCGGCCTGCTGGAGAAGTCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGCCAGGGCAAGGCCAATGCGGCCAAGTTTCTCGAGGACAACCCGGAGGTCGCCGCAGCGGTCGAGAAG
AGCATCCGCGATCAGTTGCTCGCCGCGCCGGCCAGCGCCCGTCCGGCAGCCTTGGCCGACGAGCCGGCCGACGCGGATCT
CGATTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M9YJV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.184

99.427

0.877
  recA Acinetobacter baylyi ADP1

73.199

99.427

0.728
  recA Glaesserella parasuis strain SC1401

71.098

99.14

0.705
  recA Acinetobacter baumannii D1279779

74.468

94.269

0.702
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

93.696

0.699
  recA Vibrio cholerae strain A1552

74.618

93.696

0.699
  recA Ralstonia pseudosolanacearum GMI1000

71.472

93.41

0.668
  recA Neisseria gonorrhoeae MS11

70.37

92.837

0.653
  recA Neisseria gonorrhoeae MS11

70.37

92.837

0.653
  recA Neisseria gonorrhoeae strain FA1090

70.37

92.837

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

93.696

0.616
  recA Helicobacter pylori strain NCTC11637

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.798

96.275

0.605
  recA Helicobacter pylori 26695

61.224

98.281

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Streptococcus mutans UA159

60.856

93.696

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

91.977

0.559
  recA Streptococcus mitis SK321

59.509

93.41

0.556
  recA Streptococcus pyogenes NZ131

59.385

93.123

0.553
  recA Streptococcus pneumoniae Rx1

58.537

93.983

0.55
  recA Streptococcus pneumoniae D39

58.537

93.983

0.55
  recA Streptococcus pneumoniae R6

58.537

93.983

0.55
  recA Streptococcus pneumoniae TIGR4

58.537

93.983

0.55
  recA Streptococcus mitis NCTC 12261

58.896

93.41

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.793

93.983

0.524
  recA Lactococcus lactis subsp. cremoris KW2

56.347

92.55

0.521

Multiple sequence alignment