Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MDS_RS00375 Genome accession   NC_015410
Coordinates   87289..88326 (+) Length   345 a.a.
NCBI ID   WP_013713231.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina NK-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 82289..93326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS00350 (MDS_0069) - 82542..82868 (-) 327 WP_013713226.1 tetratricopeptide repeat protein -
  MDS_RS00355 (MDS_0070) trkA 82947..84320 (-) 1374 WP_013713227.1 Trk system potassium transporter TrkA -
  MDS_RS00360 (MDS_0071) rsmB 84332..85645 (-) 1314 WP_013713228.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MDS_RS00365 (MDS_0072) fmt 85642..86574 (-) 933 WP_013713229.1 methionyl-tRNA formyltransferase -
  MDS_RS00370 (MDS_0073) def 86630..87136 (-) 507 WP_013713230.1 peptide deformylase -
  MDS_RS00375 (MDS_0074) tsaP 87289..88326 (+) 1038 WP_013713231.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MDS_RS00380 (MDS_0075) dprA 88407..89525 (+) 1119 WP_013713232.1 DNA-processing protein DprA Machinery gene
  MDS_RS00385 (MDS_0076) - 89610..90167 (+) 558 WP_013713233.1 L-threonylcarbamoyladenylate synthase -
  MDS_RS00390 (MDS_0077) - 90243..91220 (-) 978 WP_013713234.1 NADPH:quinone reductase -
  MDS_RS00395 (MDS_0078) hemF 91368..92282 (+) 915 WP_041769641.1 oxygen-dependent coproporphyrinogen oxidase -
  MDS_RS00400 (MDS_0079) aroE 92427..93248 (+) 822 WP_013713236.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38085.40 Da        Isoelectric Point: 5.4985

>NTDB_id=33775 MDS_RS00375 WP_013713231.1 87289..88326(+) (tsaP) [Ectopseudomonas mendocina NK-01]
MRKSLLALLLAAGGLALTCLAQAAVQLKDGHPDRYTVVKGDTLWDISGKFLSQPWKWPEIWHANPQVANPHLIYPGDTLN
LVYVDGQPRLMLNRGESRGTIKLSPQVRSTPMAEAIPTIPLEAINSFLLSNRIVDTPEEFNGKPYVVAGNAERVVSGAGD
RIYARGQFDEQHPVYGIFRQGKTYLDPESKEFLGINADDIGTGEIVAEEGDIGTLVLSRSTQEVRLGDRLFPTEERAINS
TFMPSEPSSEINGLILDVPRGVNQIGQFDVVTLNKGTRDGLEIGNVLAIYKTGETVRDRVTGERVKIPDERSGLLMVFRT
YDKLSYGLILQASRQLSVMDKVRNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=33775 MDS_RS00375 WP_013713231.1 87289..88326(+) (tsaP) [Ectopseudomonas mendocina NK-01]
ATGAGGAAATCACTACTCGCCCTGCTCCTGGCAGCTGGCGGATTGGCCCTGACCTGCTTGGCTCAGGCCGCAGTGCAACT
CAAGGACGGTCATCCGGACCGTTATACCGTGGTCAAGGGCGATACGCTCTGGGATATCTCCGGTAAATTCCTCAGTCAAC
CGTGGAAGTGGCCGGAGATCTGGCACGCCAACCCACAAGTCGCCAACCCGCACCTGATCTATCCCGGCGACACCCTCAAT
CTGGTCTATGTCGACGGGCAGCCGCGCCTGATGCTCAACCGCGGTGAATCGCGCGGCACCATCAAGCTATCGCCGCAGGT
GCGCAGCACACCGATGGCCGAGGCGATCCCGACCATCCCGCTGGAGGCGATCAACAGCTTCCTGCTGAGCAACCGCATCG
TCGACACTCCGGAAGAGTTCAACGGCAAGCCTTACGTCGTCGCCGGCAATGCCGAGCGTGTAGTCAGCGGCGCGGGTGAT
CGCATTTATGCTCGCGGCCAGTTCGACGAGCAGCATCCGGTCTACGGTATCTTCCGCCAGGGCAAGACCTACTTGGACCC
GGAGTCGAAAGAGTTTCTGGGGATCAACGCCGACGACATTGGTACCGGTGAGATCGTCGCCGAGGAAGGCGACATCGGTA
CGCTGGTACTGAGTCGTTCGACGCAGGAAGTGCGCCTGGGTGACCGTCTGTTTCCTACCGAAGAGCGTGCGATCAACTCC
ACCTTCATGCCCAGCGAGCCGAGCAGCGAGATCAATGGCCTGATTCTCGATGTGCCGCGTGGCGTCAACCAGATTGGCCA
GTTCGATGTGGTGACCCTGAACAAGGGCACGCGCGATGGTCTGGAGATCGGCAACGTGCTGGCGATATACAAGACCGGTG
AAACCGTACGCGATCGTGTCACTGGTGAGCGAGTGAAGATTCCGGATGAGCGCTCCGGCCTGCTGATGGTCTTCCGCACC
TACGACAAGCTCAGCTACGGCCTGATTCTGCAGGCCAGCCGCCAGCTCTCGGTGATGGACAAGGTCCGCAACCCGTAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(35-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

37.057

100

0.394

Multiple sequence alignment