Detailed information NTG0033010

Bioinformatically predicted

Overview

• Name: Cj0011c
• Type: Machinery gene
• Locus tag: NAMH_RS08245
• Genome accession: NC_012115
• Coordinates: 1567228..1567464 (-)
• Length: 78 a.a.
• NCBI ID: WP_015902049.1
• Uniprot ID: B9L6R9
• Organism: Nautilia profundicola AmH
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1562228..1572464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAMH_RS08215 (NAMH_1670)	-	1562259..1563686 (-)	1428	WP_015901806.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
NAMH_RS08220 (NAMH_1671)	-	1563696..1564739 (-)	1044	WP_015902571.1	NAD-dependent epimerase	-
NAMH_RS08225 (NAMH_1672)	-	1564736..1565029 (-)	294	WP_015901726.1	nucleotidyltransferase domain-containing protein	-
NAMH_RS09040 (NAMH_1673)	-	1564992..1565465 (-)	474	WP_012663907.1	hypothetical protein	-
NAMH_RS08235 (NAMH_1674)	-	1565485..1566677 (-)	1193	Protein_1610	nucleotide sugar dehydrogenase	-
NAMH_RS08240 (NAMH_1676)	-	1566674..1567096 (-)	423	WP_015902167.1	four helix bundle protein	-
NAMH_RS08245 (NAMH_1677)	Cj0011c	1567228..1567464 (-)	237	WP_015902049.1	ComEA family DNA-binding protein	Machinery gene
NAMH_RS08250 (NAMH_1678)	galE	1567490..1568494 (-)	1005	WP_012663537.1	UDP-glucose 4-epimerase GalE	-
NAMH_RS08255 (NAMH_1679)	-	1568491..1568910 (-)	420	WP_015901819.1	hypothetical protein	-
NAMH_RS08260 (NAMH_1680)	-	1568934..1569374 (-)	441	WP_015902779.1	Sua5/YciO/YrdC/YwlC family protein	-
NAMH_RS08265 (NAMH_1681)	-	1569361..1569783 (-)	423	WP_012663662.1	flagellar FliJ family protein	-
NAMH_RS08270 (NAMH_1682)	-	1569780..1571027 (-)	1248	WP_187146603.1	adenylosuccinate synthase	-
NAMH_RS08275 (NAMH_1683)	-	1571014..1571829 (-)	816	WP_015902051.1	ATP phosphoribosyltransferase regulatory subunit	-

Sequence

Protein

• Length: 78 a.a.
• Molecular weight: 9062.02 Da
• Isoelectric Point: 10.5767

>NTDB_id=33010 NAMH_RS08245 WP_015902049.1 1567228..1567464(-) (Cj0011c) [Nautilia profundicola AmH]
MKKFLILFLFVISLFAKININTATMQELHSLKGIGHTKALAIMEYRKKHPFQKIEDIMKVKGIGVKTFEKIKDEIEVK

Nucleotide

• Length: 237 bp

>NTDB_id=33010 NAMH_RS08245 WP_015902049.1 1567228..1567464(-) (Cj0011c) [Nautilia profundicola AmH]
ATGAAAAAGTTTTTAATTTTGTTTTTATTTGTAATAAGTTTATTTGCAAAAATCAATATCAATACGGCAACAATGCAAGA
ATTACACTCTTTAAAAGGTATAGGTCATACAAAAGCCTTAGCTATTATGGAATACCGTAAAAAACATCCGTTTCAAAAAA
TAGAAGACATTATGAAAGTAAAAGGCATAGGCGTTAAAACATTTGAAAAAATAAAAGATGAGATAGAAGTTAAATGA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (17-75)

3D structure

• AlphaFold DB: B9L6R9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.962	100	0.577
comE	Neisseria gonorrhoeae MS11	45.679	100	0.474
comE	Neisseria gonorrhoeae MS11	45.679	100	0.474
comE	Neisseria gonorrhoeae MS11	45.679	100	0.474
comE	Neisseria gonorrhoeae MS11	45.679	100	0.474
comEA	Bacillus subtilis subsp. subtilis str. 168	57.812	82.051	0.474
comEA	Lactococcus lactis subsp. cremoris KW2	50.794	80.769	0.41
comE1/comEA	Haemophilus influenzae Rd KW20	52.459	78.205	0.41
comEA	Acinetobacter baylyi ADP1	50	79.487	0.397
comEA	Staphylococcus aureus MW2	53.448	74.359	0.397
comEA	Staphylococcus aureus N315	53.448	74.359	0.397
comEA	Vibrio campbellii strain DS40M4	50	76.923	0.385
comEA/comE1	Glaesserella parasuis strain SC1401	50	76.923	0.385
comEA	Latilactobacillus sakei subsp. sakei 23K	47.619	80.769	0.385
comEA	Acinetobacter baumannii D1279779	47.541	78.205	0.372
comEA	Vibrio parahaemolyticus RIMD 2210633	48.333	76.923	0.372