Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EDM51_RS09270 Genome accession   NZ_CP033401
Coordinates   1726292..1726921 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WCHEC020031     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721292..1731921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EDM51_RS09255 (EDM51_09255) helD 1721534..1723588 (-) 2055 WP_000420536.1 DNA helicase IV -
  EDM51_RS09260 (EDM51_09260) yccF 1723711..1724157 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EDM51_RS09265 (EDM51_09265) yccS 1724167..1726329 (+) 2163 WP_000875023.1 YccS family putative transporter -
  EDM51_RS09270 (EDM51_09270) sxy/tfoX 1726292..1726921 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EDM51_RS09275 (EDM51_09275) sulA 1727140..1727649 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EDM51_RS09280 (EDM51_09280) ompA 1728006..1729058 (+) 1053 WP_001361736.1 porin OmpA -
  EDM51_RS09285 (EDM51_09285) matP 1729134..1729586 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EDM51_RS09290 (EDM51_09290) ycbZ 1729772..1731532 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=323629 EDM51_RS09270 WP_000839153.1 1726292..1726921(-) (sxy/tfoX) [Escherichia coli strain WCHEC020031]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=323629 EDM51_RS09270 WP_000839153.1 1726292..1726921(-) (sxy/tfoX) [Escherichia coli strain WCHEC020031]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment