Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   FHI56_RS01005 Genome accession   NZ_CP040804
Coordinates   16786..17283 (-) Length   165 a.a.
NCBI ID   WP_013989953.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LAB813     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 11786..22283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS00985 (FHI56_00985) - 11819..13423 (-) 1605 WP_149561109.1 CTP synthase -
  FHI56_RS00990 (FHI56_00990) rpoE 13676..14251 (-) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  FHI56_RS00995 (FHI56_00995) tig 14409..15692 (-) 1284 WP_002885606.1 trigger factor -
  FHI56_RS01000 (FHI56_01000) - 15835..16677 (+) 843 WP_037605466.1 mechanosensitive ion channel family protein -
  FHI56_RS01005 (FHI56_01005) comX/sigX 16786..17283 (-) 498 WP_013989953.1 sigma factor Regulator
  FHI56_RS01010 (FHI56_01010) tnpA 17540..18013 (-) 474 WP_013990678.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19989.79 Da        Isoelectric Point: 4.9953

>NTDB_id=323515 FHI56_RS01005 WP_013989953.1 16786..17283(-) (comX/sigX) [Streptococcus salivarius strain LAB813]
MEQEIFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLNAFRNQLSSEDATKLDRLLAGECFRGRKKMIRELKVWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=323515 FHI56_RS01005 WP_013989953.1 16786..17283(-) (comX/sigX) [Streptococcus salivarius strain LAB813]
ATGGAACAAGAAATTTTTGTTCACGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAGGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGCTACGGCGTTATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCTAATCGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTTCCGAATAAAGAGTTAGATGC
TGTTGATAGGCTTGTTTATGATGAGCAGCTTAATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGCTACTAAGTTAGACC
GTTTGCTAGCTGGGGAGTGTTTTAGAGGTCGAAAAAAGATGATTCGAGAGTTAAAAGTTTGGATGGTTGATTTTGATCCT
TACAATGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.