Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | EBA20_RS16930 | Genome accession | NZ_CP033197 |
| Coordinates | 3412093..3412518 (-) | Length | 141 a.a. |
| NCBI ID | WP_011408068.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain KXO85 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3410369..3430209 | 3412093..3412518 | within | 0 |
Gene organization within MGE regions
Location: 3410369..3430209
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBA20_RS16925 (EBA20_16925) | - | 3410369..3411958 (-) | 1590 | WP_011408069.1 | phosphoethanolamine transferase | - |
| EBA20_RS16930 (EBA20_16930) | pilA2 | 3412093..3412518 (-) | 426 | WP_011408068.1 | pilin | Machinery gene |
| EBA20_RS16935 (EBA20_16935) | - | 3412873..3414131 (+) | 1259 | Protein_3060 | type II secretion system F family protein | - |
| EBA20_RS16940 (EBA20_16940) | - | 3414138..3415001 (+) | 864 | WP_011258358.1 | A24 family peptidase | - |
| EBA20_RS16945 (EBA20_16945) | coaE | 3415015..3415623 (+) | 609 | WP_011258357.1 | dephospho-CoA kinase | - |
| EBA20_RS16950 (EBA20_16950) | - | 3415694..3417013 (+) | 1320 | WP_115801881.1 | IS701-like element ISXo15 family transposase | - |
| EBA20_RS16965 (EBA20_16965) | - | 3417860..3418816 (-) | 957 | WP_041182041.1 | IS30-like element IS1112a family transposase | - |
| EBA20_RS25030 | - | 3418918..3419106 (+) | 189 | WP_146768692.1 | hypothetical protein | - |
| EBA20_RS25035 | - | 3419103..3419432 (+) | 330 | WP_125168748.1 | hypothetical protein | - |
| EBA20_RS16975 (EBA20_16970) | - | 3419509..3420942 (+) | 1434 | Protein_3067 | RHS repeat-associated core domain-containing protein | - |
| EBA20_RS16980 (EBA20_16975) | - | 3420948..3421316 (+) | 369 | WP_011408064.1 | DUF6869 domain-containing protein | - |
| EBA20_RS16990 (EBA20_16985) | - | 3421498..3421830 (+) | 333 | Protein_3069 | transposase | - |
| EBA20_RS16995 (EBA20_16990) | - | 3422043..3423011 (-) | 969 | WP_011409545.1 | IS5-like element ISXo1 family transposase | - |
| EBA20_RS17000 (EBA20_16995) | - | 3423107..3423274 (+) | 168 | Protein_3071 | IS701 family transposase | - |
| EBA20_RS17010 (EBA20_17005) | - | 3423392..3423613 (+) | 222 | Protein_3072 | IS4 family transposase | - |
| EBA20_RS17015 (EBA20_17010) | - | 3423703..3424659 (+) | 957 | WP_041182041.1 | IS30-like element IS1112a family transposase | - |
| EBA20_RS17020 (EBA20_17015) | - | 3424919..3425887 (-) | 969 | WP_011258803.1 | IS5-like element ISXo1 family transposase | - |
| EBA20_RS17025 | - | 3425939..3426427 (-) | 489 | WP_128415435.1 | DUF6714 family protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14442.76 Da Isoelectric Point: 9.0090
>NTDB_id=322403 EBA20_RS16930 WP_011408068.1 3412093..3412518(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain KXO85]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=322403 EBA20_RS16930 WP_011408068.1 3412093..3412518(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain KXO85]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.471 |
96.454 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.471 |
96.454 |
0.496 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.818 |
100 |
0.489 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.054 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.278 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae MS11 |
37.5 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.446 |
98.582 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
95.745 |
0.404 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.383 |
| pilA | Pseudomonas aeruginosa PAK |
36 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |