Detailed information NTG0322348

Bioinformatically predicted

Overview

• Name: pilA2
• Type: Machinery gene
• Locus tag: EBA19_RS08510
• Genome accession: NZ_CP033193
• Coordinates: 1651051..1651476 (+)
• Length: 141 a.a.
• NCBI ID: WP_011408068.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain JW11089
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1644135..1655341	1651051..1651476	within	0

Gene organization within MGE regions

Location: 1644135..1655341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EBA19_RS25220	-	1644135..1644683 (-)	549	WP_133264969.1	hypothetical protein	-
EBA19_RS08475 (EBA19_08435)	-	1644751..1645707 (+)	957	WP_041182041.1	IS30-like element IS1112a family transposase	-
EBA19_RS08490 (EBA19_08450)	-	1646554..1647874 (-)	1321	Protein_1512	IS701 family transposase	-
EBA19_RS08495 (EBA19_08455)	coaE	1647945..1648553 (-)	609	WP_011258357.1	dephospho-CoA kinase	-
EBA19_RS08500 (EBA19_08460)	-	1648567..1649430 (-)	864	WP_011258358.1	A24 family peptidase	-
EBA19_RS08505 (EBA19_08465)	pilC	1649437..1650696 (-)	1260	WP_011408067.1	type II secretion system F family protein	Machinery gene
EBA19_RS08510 (EBA19_08470)	pilA2	1651051..1651476 (+)	426	WP_011408068.1	pilin	Machinery gene
EBA19_RS08515 (EBA19_08475)	-	1651611..1653200 (+)	1590	WP_011408069.1	phosphoethanolamine transferase	-
EBA19_RS08520 (EBA19_08480)	-	1653211..1653846 (+)	636	WP_233282869.1	hypothetical protein	-
EBA19_RS26190 (EBA19_08485)	-	1653816..1655341 (+)	1526	Protein_1519	hypothetical protein	-

Sequence

Protein

• Length: 141 a.a.
• Molecular weight: 14442.76 Da
• Isoelectric Point: 9.0090

>NTDB_id=322348 EBA19_RS08510 WP_011408068.1 1651051..1651476(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain JW11089]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT

Nucleotide

• Length: 426 bp

>NTDB_id=322348 EBA19_RS08510 WP_011408068.1 1651051..1651476(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain JW11089]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (35-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA2	Legionella pneumophila str. Paris	51.471	96.454	0.496
pilA2	Legionella pneumophila strain ERS1305867	51.471	96.454	0.496
pilA	Ralstonia pseudosolanacearum GMI1000	41.818	100	0.489
comP	Acinetobacter baylyi ADP1	43.537	100	0.454
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	34.054	100	0.447
pilE	Neisseria gonorrhoeae strain FA1090	37.278	100	0.447
pilE	Neisseria gonorrhoeae MS11	37.5	100	0.426
pilA/pilAI	Pseudomonas stutzeri DSM 10701	42.446	98.582	0.418
pilA/pilAII	Pseudomonas stutzeri DSM 10701	42.222	95.745	0.404
pilA/pilA1	Eikenella corrodens VA1	37.333	100	0.397
pilA	Acinetobacter baumannii strain A118	38.298	100	0.383
pilA	Pseudomonas aeruginosa PAK	36	100	0.383
pilA	Vibrio parahaemolyticus RIMD 2210633	40.157	90.071	0.362