Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | EBA22_RS08220 | Genome accession | NZ_CP033191 |
| Coordinates | 1606523..1606948 (+) | Length | 141 a.a. |
| NCBI ID | WP_011408068.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzae strain PXO364 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1589739..1609312 | 1606523..1606948 | within | 0 |
Gene organization within MGE regions
Location: 1589739..1609312
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBA22_RS08125 (EBA22_08135) | - | 1589739..1591103 (+) | 1365 | WP_133260904.1 | RHS repeat protein | - |
| EBA22_RS08130 (EBA22_08140) | - | 1591217..1594228 (+) | 3012 | WP_243744006.1 | RHS repeat-associated core domain-containing protein | - |
| EBA22_RS08135 | - | 1594228..1594716 (+) | 489 | WP_128415435.1 | DUF6714 family protein | - |
| EBA22_RS08140 (EBA22_08145) | - | 1594768..1595736 (+) | 969 | WP_011258802.1 | IS5-like element ISXo1 family transposase | - |
| EBA22_RS08145 | - | 1595885..1596184 (+) | 300 | WP_125168747.1 | hypothetical protein | - |
| EBA22_RS08150 | - | 1596181..1596510 (+) | 330 | WP_125168748.1 | hypothetical protein | - |
| EBA22_RS08155 (EBA22_08150) | - | 1596587..1598020 (+) | 1434 | Protein_1462 | RHS repeat-associated core domain-containing protein | - |
| EBA22_RS08160 (EBA22_08155) | - | 1597981..1598394 (+) | 414 | WP_243744007.1 | DUF6869 domain-containing protein | - |
| EBA22_RS08165 (EBA22_08160) | - | 1598564..1599532 (-) | 969 | WP_011409545.1 | IS5-like element ISXo1 family transposase | - |
| EBA22_RS08170 (EBA22_08165) | - | 1599628..1599795 (+) | 168 | Protein_1465 | IS701 family transposase | - |
| EBA22_RS08180 (EBA22_08175) | - | 1599913..1600134 (+) | 222 | Protein_1466 | IS4 family transposase | - |
| EBA22_RS08185 (EBA22_08180) | - | 1600224..1601180 (+) | 957 | WP_041182041.1 | IS30-like element IS1112a family transposase | - |
| EBA22_RS08200 (EBA22_08195) | - | 1602027..1603346 (-) | 1320 | WP_133260528.1 | IS701-like element ISXo15 family transposase | - |
| EBA22_RS08205 (EBA22_08200) | coaE | 1603417..1604025 (-) | 609 | WP_011258357.1 | dephospho-CoA kinase | - |
| EBA22_RS08210 (EBA22_08205) | - | 1604039..1604902 (-) | 864 | WP_011258358.1 | A24 family peptidase | - |
| EBA22_RS08215 (EBA22_08210) | pilC | 1604909..1606168 (-) | 1260 | WP_011408067.1 | type II secretion system F family protein | Machinery gene |
| EBA22_RS08220 (EBA22_08215) | pilA2 | 1606523..1606948 (+) | 426 | WP_011408068.1 | pilin | Machinery gene |
| EBA22_RS08225 (EBA22_08220) | - | 1607083..1608672 (+) | 1590 | WP_011408069.1 | phosphoethanolamine transferase | - |
| EBA22_RS08230 (EBA22_08225) | - | 1608683..1609312 (+) | 630 | WP_011408070.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14442.76 Da Isoelectric Point: 9.0090
>NTDB_id=322310 EBA22_RS08220 WP_011408068.1 1606523..1606948(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain PXO364]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=322310 EBA22_RS08220 WP_011408068.1 1606523..1606948(+) (pilA2) [Xanthomonas oryzae pv. oryzae strain PXO364]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGCAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
51.471 |
96.454 |
0.496 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
51.471 |
96.454 |
0.496 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.818 |
100 |
0.489 |
| comP | Acinetobacter baylyi ADP1 |
43.537 |
100 |
0.454 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.054 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
37.278 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae MS11 |
37.5 |
100 |
0.426 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.446 |
98.582 |
0.418 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.222 |
95.745 |
0.404 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.383 |
| pilA | Pseudomonas aeruginosa PAK |
36 |
100 |
0.383 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |