Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   EBA12_RS17210 Genome accession   NZ_CP033174
Coordinates   3590871..3591296 (-) Length   141 a.a.
NCBI ID   WP_053514082.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain CFBP7340     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3585871..3596296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA12_RS24095 (EBA12_17130) - 3587006..3588531 (-) 1526 Protein_3136 hypothetical protein -
  EBA12_RS17200 (EBA12_17135) - 3588501..3589076 (-) 576 WP_240796120.1 hypothetical protein -
  EBA12_RS17205 (EBA12_17140) - 3589147..3590736 (-) 1590 WP_053514081.1 phosphoethanolamine transferase -
  EBA12_RS17210 (EBA12_17145) pilA2 3590871..3591296 (-) 426 WP_053514082.1 pilin Machinery gene
  EBA12_RS17215 (EBA12_17150) pilC 3591652..3592911 (+) 1260 WP_024743356.1 type II secretion system F family protein Machinery gene
  EBA12_RS17220 (EBA12_17155) - 3592918..3593781 (+) 864 WP_024743357.1 A24 family peptidase -
  EBA12_RS17225 (EBA12_17160) coaE 3593795..3594400 (+) 606 WP_024743358.1 dephospho-CoA kinase -
  EBA12_RS17230 (EBA12_17165) - 3594627..3595961 (-) 1335 WP_033003293.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14428.74 Da        Isoelectric Point: 9.0090

>NTDB_id=321991 EBA12_RS17210 WP_053514082.1 3590871..3591296(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain CFBP7340]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETSSSLGGLTNVTLANSGYAFPGATK
YVSGVTIADGTGVVTVTSTVPNAAGNILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=321991 EBA12_RS17210 WP_053514082.1 3590871..3591296(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain CFBP7340]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGCGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTTCATCGTCGCTCGGCGGTCTTACTAATGTTACTCTCGCGAATTCGGGCTACGCATTCCCGGGTGCCACGAAG
TATGTCAGCGGCGTCACCATCGCCGATGGTACGGGCGTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTAACAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.471

96.454

0.496
  pilA2 Legionella pneumophila strain ERS1305867

51.471

96.454

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

40

100

0.468
  comP Acinetobacter baylyi ADP1

44.218

100

0.461
  pilE Neisseria gonorrhoeae MS11

39.752

100

0.454
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.514

100

0.44
  pilE Neisseria gonorrhoeae strain FA1090

38.272

100

0.44
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.356

100

0.397
  pilA/pilA1 Eikenella corrodens VA1

37.333

100

0.397
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.481

95.745

0.397
  pilA Pseudomonas aeruginosa PAK

35.897

100

0.397
  pilA Glaesserella parasuis strain SC1401

35.526

100

0.383
  pilA Acinetobacter baumannii strain A118

37.241

100

0.383

Multiple sequence alignment