Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   PCC7424_RS23075 Genome accession   NC_011729
Coordinates   5199609..5202992 (+) Length   1127 a.a.
NCBI ID   WP_015956638.1    Uniprot ID   B7KBS7
Organism   Gloeothece citriformis PCC 7424     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5194609..5207992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7424_RS23050 (PCC7424_4690) - 5194652..5195644 (+) 993 WP_015956633.1 ribose-phosphate pyrophosphokinase -
  PCC7424_RS23055 (PCC7424_4691) lepB 5195723..5196367 (-) 645 WP_015956634.1 signal peptidase I -
  PCC7424_RS23060 (PCC7424_4692) - 5196503..5197822 (+) 1320 WP_015956635.1 dihydroorotase -
  PCC7424_RS23065 (PCC7424_4693) - 5197934..5198341 (-) 408 WP_015956636.1 hypothetical protein -
  PCC7424_RS23070 (PCC7424_4694) - 5198771..5199484 (+) 714 WP_015956637.1 gamma-glutamylcyclotransferase family protein -
  PCC7424_RS23075 (PCC7424_4695) pilL-C 5199609..5202992 (+) 3384 WP_015956638.1 hybrid sensor histidine kinase/response regulator Machinery gene
  PCC7424_RS23080 (PCC7424_4696) - 5203476..5204849 (+) 1374 WP_015956639.1 DUF1800 domain-containing protein -
  PCC7424_RS23085 (PCC7424_4697) - 5204878..5206089 (+) 1212 WP_015956640.1 DUF1501 domain-containing protein -
  PCC7424_RS23090 (PCC7424_4698) - 5206331..5206792 (-) 462 WP_015956641.1 DUF29 family protein -
  PCC7424_RS23095 (PCC7424_4699) - 5206836..5207270 (-) 435 WP_015956642.1 beta-carboxysome assembly chaperone CcmS -
  PCC7424_RS23100 (PCC7424_4700) - 5207456..5207776 (-) 321 WP_015956643.1 hypothetical protein -

Sequence

Protein


Download         Length: 1127 a.a.        Molecular weight: 126034.45 Da        Isoelectric Point: 4.4257

>NTDB_id=32153 PCC7424_RS23075 WP_015956638.1 5199609..5202992(+) (pilL-C) [Gloeothece citriformis PCC 7424]
MPRHDSDNLFEDDLANFLNSFDDSESETPSFIETDPEDTLEDLISFLDNSPVQEKTKSKGSLSSLPSEQEIEAIFDNDVF
WPESNAAPIIYNSDENVELIETDKDDKIFQTLDFYENCDNDYNQEIIRFFVEDSTEQGEIQGETPEESFLDLEKSATENP
WDELELLLKDDFYSPSIEPQITPPVEESISHQAYTHSPGLSFYETFEELDDLLETPATLLDQELKGIEEFDQLETIIDAP
CTVSLAQVPDNLLASNLDTHLSSEGEHELIDDLDQQLNELLVQTNQNITQSPANARPRGKSKAFEQTMRVPIKQLDNLSN
LIGELVVKRNRLEQDQDRLRLFLDNLLNQVQQLSDIGGRMQDLYERTLLEGALLASRNRARQSDIDRASFQDSSTSPTPK
LFDQDLDALEMDRFTDFHLLSQEMIELIVRVRESSSDIQFVIDETDQVARSLRQVSTQLQEGMTKSRMVPFSQAADHLPR
AIRDISVKLNKQAKLHVEGRDVLIDKMILEHLYNPMTHLINNAMTHGIESPSQRQQKGKPPEGQIRVRAFLQGNQTVISI
SDDGAGIDIKRVKRKAIEKGLIVPEEANILTEQELYDFLFHPGFSTKDKADDFAGRGVGLDVVRKEMTEIRGTVTIDSSP
DKGTIFTIRLPLTLSISKALCCVSNHARIAFPMDGVEDMKDFLPSEIKTNAQGQSCIPWLDGTLPFQPLSQLLSYNRYLS
RGNVYGGRQEEDTVSVVILRSAGNLLAVQVDQVLGEQEIVIKQIEGPIPKPVGIAGATVLGDGSVMTIADVLELVEIAQG
RLKTDAMSSPWRKAAMAMQPPTEANGEQTVLIVDDSITVRELLSLSFKKAGYRVEQARDGQEAWEKLRSGLPCDIVFCDI
EMPRMNGLELLANIQKDEKLIHIPVAVLSSRGAEKHRKVAAKLGASGYFTKPYTEKDLLDAAKRMTAGEVLLAGSVRLKR
KPKLEPKNTVSHRKNLTVVGNSASIVASVGTIAQKASHLVLIIDDSVMVREMLSMTFGKDGYEIEQARDGQEAWEKLRSG
LPCDLILCDIEMPRMNGLEFLSRVQEDEKLSQIPVAMITSRGAQKMQNIAAQRGARGYFVKPYIDSVLLDAAKRLIAGEV
LLEVESK

Nucleotide


Download         Length: 3384 bp        

>NTDB_id=32153 PCC7424_RS23075 WP_015956638.1 5199609..5202992(+) (pilL-C) [Gloeothece citriformis PCC 7424]
ATGCCACGCCATGACTCTGATAATTTATTTGAGGATGATCTAGCTAACTTTTTAAACAGTTTTGACGACAGTGAGAGTGA
AACGCCATCCTTTATTGAAACCGATCCAGAGGATACCCTCGAAGATTTAATCAGTTTTTTAGATAATAGTCCAGTCCAAG
AAAAGACAAAATCTAAGGGAAGTTTAAGCTCATTGCCATCAGAACAAGAAATAGAAGCTATTTTTGATAATGATGTTTTT
TGGCCAGAGAGTAATGCTGCTCCCATCATCTATAATTCTGATGAAAATGTCGAACTTATAGAGACTGACAAGGACGACAA
AATTTTTCAAACATTAGATTTTTATGAGAATTGTGATAATGACTATAATCAAGAGATTATTCGTTTCTTTGTCGAAGATT
CAACGGAGCAAGGAGAAATCCAAGGAGAAACCCCAGAGGAAAGTTTTTTAGATTTAGAAAAATCCGCAACTGAAAATCCT
TGGGATGAACTAGAATTATTATTAAAAGATGACTTTTACTCACCTTCCATTGAGCCACAAATCACTCCCCCAGTTGAAGA
ATCCATCAGCCATCAAGCTTACACTCATTCACCGGGTTTATCCTTTTATGAAACCTTTGAAGAATTAGACGACCTTTTAG
AAACACCTGCCACGCTTCTAGACCAAGAACTTAAAGGAATAGAAGAATTTGATCAATTAGAAACTATTATTGATGCTCCT
TGTACAGTAAGCCTTGCTCAAGTTCCAGACAACTTATTAGCCTCGAATTTAGATACTCATCTCTCATCTGAGGGAGAACA
TGAACTGATTGACGACCTCGATCAACAATTAAATGAACTTTTAGTCCAAACCAATCAAAATATTACACAATCTCCGGCCA
ACGCCAGACCCAGAGGTAAATCAAAAGCCTTTGAACAAACCATGCGAGTTCCGATCAAACAACTCGATAATCTCAGTAAC
TTGATAGGGGAACTGGTTGTTAAACGAAACCGACTCGAACAAGACCAAGATCGTCTGAGATTATTTTTAGATAATTTACT
CAATCAGGTACAACAACTCAGTGATATTGGTGGGAGAATGCAGGATCTTTATGAAAGAACCCTATTAGAAGGAGCTTTAC
TGGCCAGCCGAAATCGAGCTAGACAATCAGACATTGACAGAGCATCGTTTCAGGACTCTTCAACCTCCCCAACCCCTAAA
CTCTTCGATCAAGATCTTGATGCCCTAGAAATGGATCGCTTTACTGACTTCCATTTACTCTCTCAAGAAATGATAGAATT
AATCGTTAGAGTGAGGGAATCTTCGTCAGATATTCAATTTGTCATCGACGAAACCGATCAAGTCGCCCGTAGTTTGCGCC
AAGTCAGCACCCAACTTCAAGAAGGGATGACCAAATCGAGAATGGTTCCCTTTTCCCAAGCCGCCGACCATTTGCCCAGA
GCCATTCGAGATATTTCTGTCAAACTCAATAAACAAGCCAAGCTTCATGTAGAAGGGCGAGATGTTTTGATTGATAAAAT
GATTCTAGAACATCTCTATAATCCCATGACCCATTTAATTAACAATGCCATGACTCATGGGATTGAATCGCCTTCTCAAC
GACAACAAAAAGGAAAACCCCCAGAAGGTCAAATTCGGGTTCGGGCGTTCTTACAGGGAAATCAAACCGTTATTTCTATC
TCAGATGATGGGGCAGGAATTGATATTAAACGAGTCAAACGCAAAGCGATCGAAAAAGGGCTAATTGTCCCAGAAGAGGC
TAACATCCTCACAGAACAAGAATTATATGATTTTCTATTCCATCCGGGTTTTAGTACCAAAGATAAAGCGGATGACTTCG
CCGGACGAGGGGTAGGATTAGACGTAGTGCGAAAAGAAATGACGGAAATTCGCGGGACTGTAACCATTGATTCTAGCCCA
GATAAAGGCACTATTTTCACGATCCGTCTGCCGTTAACCCTCAGTATTAGTAAAGCCCTCTGCTGTGTAAGTAATCATGC
TCGGATTGCCTTTCCGATGGATGGGGTAGAAGATATGAAAGATTTTCTTCCCAGTGAAATTAAAACCAATGCCCAAGGAC
AATCCTGTATCCCTTGGCTTGACGGAACTCTGCCTTTCCAACCCCTCAGTCAATTACTCTCTTATAATCGTTATCTGAGT
CGAGGCAATGTGTATGGGGGCAGACAAGAGGAAGATACGGTTTCTGTTGTGATTCTTCGCAGTGCCGGCAACCTTTTAGC
GGTTCAAGTCGATCAGGTATTGGGAGAACAAGAAATCGTTATTAAACAAATAGAAGGCCCTATCCCCAAACCAGTCGGCA
TTGCCGGAGCAACCGTACTAGGCGATGGCTCGGTTATGACCATTGCGGATGTATTAGAATTGGTTGAAATTGCCCAAGGA
CGCTTAAAAACTGATGCGATGAGTAGCCCTTGGCGCAAAGCAGCGATGGCGATGCAGCCTCCTACAGAAGCTAATGGTGA
GCAAACCGTTTTAATTGTCGATGATTCGATTACGGTTCGGGAATTACTGTCCTTAAGCTTCAAAAAAGCCGGTTATCGGG
TTGAACAAGCCAGAGATGGACAAGAAGCCTGGGAAAAACTCCGTTCGGGTTTACCTTGTGATATCGTCTTCTGTGACATC
GAAATGCCGAGAATGAATGGGTTAGAATTACTGGCAAATATTCAAAAAGACGAAAAACTCATTCATATCCCTGTTGCGGT
TTTATCCTCTAGAGGCGCAGAAAAACACCGAAAAGTGGCGGCTAAATTAGGCGCGAGTGGCTATTTTACCAAGCCCTACA
CCGAAAAAGATTTATTGGATGCTGCTAAACGGATGACCGCAGGAGAAGTTTTATTAGCCGGTAGCGTTAGACTAAAGAGA
AAACCAAAACTAGAGCCGAAAAATACGGTTTCTCATCGCAAAAATCTTACCGTTGTTGGAAATTCAGCCTCTATTGTCGC
CTCTGTTGGGACTATCGCTCAAAAAGCTAGTCATTTAGTTTTAATTATTGATGATTCGGTGATGGTTAGAGAAATGTTAT
CCATGACGTTTGGTAAAGATGGATATGAAATAGAACAAGCTAGAGATGGACAAGAAGCGTGGGAAAAACTTCGCTCTGGG
TTACCCTGTGATTTAATTCTGTGTGATATTGAAATGCCCAGAATGAATGGTTTAGAATTCCTCTCTCGTGTGCAAGAAGA
TGAAAAACTCTCACAAATTCCAGTGGCGATGATTACCTCCAGAGGAGCGCAAAAAATGCAAAATATTGCAGCCCAACGGG
GAGCGAGAGGTTATTTTGTTAAACCTTATATCGATTCGGTTTTACTCGATGCGGCTAAACGTCTCATTGCGGGGGAAGTT
TTATTAGAAGTCGAGAGTAAATAA

Domains

Predicted by InterproScan.

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(306-362)

Response regulator receiver domain (Response_reg)

(1000-1111)

Response regulator receiver domain (Response_reg)

(830-942)

CheW-like domain (CheW)

(659-796)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(516-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7KBS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

63.32

86.602

0.548

Multiple sequence alignment