Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | TMZ1T_RS18890 | Genome accession | NC_011662 |
| Coordinates | 4291911..4292312 (+) | Length | 133 a.a. |
| NCBI ID | WP_012586208.1 | Uniprot ID | C4KD70 |
| Organism | Thauera aminoaromatica | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4287620..4304144 | 4291911..4292312 | within | 0 |
Gene organization within MGE regions
Location: 4287620..4304144
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TMZ1T_RS21690 | - | 4287620..4288120 (-) | 501 | WP_261789087.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| TMZ1T_RS18860 | - | 4288144..4288524 (+) | 381 | WP_261789088.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| TMZ1T_RS18865 (Tmz1t_3892) | - | 4288511..4290196 (-) | 1686 | WP_012586206.1 | IS1634 family transposase | - |
| TMZ1T_RS18870 | - | 4290305..4290508 (+) | 204 | WP_187283014.1 | hypothetical protein | - |
| TMZ1T_RS18875 (Tmz1t_3893) | - | 4290579..4290833 (-) | 255 | WP_012586207.1 | Txe/YoeB family addiction module toxin | - |
| TMZ1T_RS18880 (Tmz1t_3894) | - | 4290823..4291089 (-) | 267 | WP_004361138.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| TMZ1T_RS18885 | - | 4291210..4291365 (+) | 156 | WP_144312187.1 | hypothetical protein | - |
| TMZ1T_RS20745 (Tmz1t_3895) | - | 4291382..4291690 (+) | 309 | WP_261789205.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| TMZ1T_RS18890 (Tmz1t_3896) | pilA/pilAI | 4291911..4292312 (+) | 402 | WP_012586208.1 | pilin | Machinery gene |
| TMZ1T_RS18895 (Tmz1t_3897) | - | 4292407..4294353 (+) | 1947 | WP_012586209.1 | lipopolysaccharide assembly protein LapB | - |
| TMZ1T_RS18900 (Tmz1t_3898) | - | 4294350..4295207 (+) | 858 | WP_012586210.1 | glycosyltransferase family 2 protein | - |
| TMZ1T_RS18905 (Tmz1t_3899) | - | 4295379..4296482 (+) | 1104 | WP_222702378.1 | glycosyltransferase | - |
| TMZ1T_RS18910 (Tmz1t_3900) | - | 4296508..4298214 (+) | 1707 | WP_012586212.1 | ABC transporter ATP-binding protein | - |
| TMZ1T_RS20750 (Tmz1t_3901) | - | 4298292..4299311 (+) | 1020 | WP_083768713.1 | glycosyltransferase | - |
| TMZ1T_RS21210 (Tmz1t_3902) | - | 4299330..4301372 (+) | 2043 | WP_144312188.1 | HAD family hydrolase | - |
| TMZ1T_RS18915 (Tmz1t_3903) | glf | 4301380..4302489 (+) | 1110 | WP_012586215.1 | UDP-galactopyranose mutase | - |
| TMZ1T_RS18920 (Tmz1t_3904) | - | 4302505..4303629 (+) | 1125 | WP_012586216.1 | glycosyltransferase family 4 protein | - |
| TMZ1T_RS18925 (Tmz1t_3905) | - | 4303764..4304144 (-) | 381 | WP_012586217.1 | type II toxin-antitoxin system HigA family antitoxin | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 13593.77 Da Isoelectric Point: 8.8611
>NTDB_id=32024 TMZ1T_RS18890 WP_012586208.1 4291911..4292312(+) (pilA/pilAI) [Thauera aminoaromatica]
MKKMQQGFTLIELMIVVAIIGILAAVALPAYSDYQAKAKLTAGLAEISAGKTAFEELRNNNVAVTAAADIGLQATTGNCA
ITATATTIVCTLANAPSQVNGKTITWTRTASTGAWSCATSAPAKYAPKTCPGV
MKKMQQGFTLIELMIVVAIIGILAAVALPAYSDYQAKAKLTAGLAEISAGKTAFEELRNNNVAVTAAADIGLQATTGNCA
ITATATTIVCTLANAPSQVNGKTITWTRTASTGAWSCATSAPAKYAPKTCPGV
Nucleotide
Download Length: 402 bp
>NTDB_id=32024 TMZ1T_RS18890 WP_012586208.1 4291911..4292312(+) (pilA/pilAI) [Thauera aminoaromatica]
ATGAAAAAGATGCAACAAGGCTTCACCCTGATCGAACTGATGATCGTCGTGGCGATCATCGGCATCCTGGCTGCGGTGGC
GCTGCCGGCGTATTCGGATTACCAGGCCAAGGCGAAACTTACCGCAGGCCTTGCGGAGATCTCGGCAGGTAAGACTGCAT
TTGAGGAACTCCGTAACAACAACGTTGCGGTTACCGCCGCGGCCGATATTGGCCTCCAAGCCACGACCGGGAACTGCGCC
ATTACTGCGACCGCCACAACCATCGTTTGCACTCTGGCGAATGCGCCTTCGCAGGTCAATGGCAAGACGATCACCTGGAC
TCGAACCGCAAGCACTGGCGCGTGGAGTTGCGCAACCAGCGCCCCGGCCAAGTACGCGCCGAAGACCTGCCCGGGCGTCT
AA
ATGAAAAAGATGCAACAAGGCTTCACCCTGATCGAACTGATGATCGTCGTGGCGATCATCGGCATCCTGGCTGCGGTGGC
GCTGCCGGCGTATTCGGATTACCAGGCCAAGGCGAAACTTACCGCAGGCCTTGCGGAGATCTCGGCAGGTAAGACTGCAT
TTGAGGAACTCCGTAACAACAACGTTGCGGTTACCGCCGCGGCCGATATTGGCCTCCAAGCCACGACCGGGAACTGCGCC
ATTACTGCGACCGCCACAACCATCGTTTGCACTCTGGCGAATGCGCCTTCGCAGGTCAATGGCAAGACGATCACCTGGAC
TCGAACCGCAAGCACTGGCGCGTGGAGTTGCGCAACCAGCGCCCCGGCCAAGTACGCGCCGAAGACCTGCCCGGGCGTCT
AA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
48.529 |
100 |
0.496 |
| pilA2 | Legionella pneumophila str. Paris |
42.759 |
100 |
0.466 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.203 |
100 |
0.459 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.254 |
100 |
0.451 |
| pilA | Acinetobacter baumannii strain A118 |
43.704 |
100 |
0.444 |
| comP | Acinetobacter baylyi ADP1 |
39.726 |
100 |
0.436 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
34.969 |
100 |
0.429 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.411 |
96.992 |
0.421 |
| pilA | Pseudomonas aeruginosa PAK |
38.095 |
100 |
0.421 |
| pilA | Vibrio cholerae C6706 |
37.162 |
100 |
0.414 |
| pilA | Vibrio cholerae strain A1552 |
37.162 |
100 |
0.414 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.162 |
100 |
0.414 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.13 |
100 |
0.406 |