Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E4T63_RS00100 Genome accession   NZ_CP038438
Coordinates   21183..22280 (+) Length   365 a.a.
NCBI ID   WP_134785073.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain LBUM677     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 16183..27280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS00080 (E4T63_00080) rsmB 17085..18395 (-) 1311 WP_135294652.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  E4T63_RS00085 (E4T63_00085) fmt 18392..19351 (-) 960 WP_135294653.1 methionyl-tRNA formyltransferase -
  E4T63_RS00090 (E4T63_00090) def 19409..19915 (-) 507 WP_027610272.1 peptide deformylase -
  E4T63_RS00095 (E4T63_00095) tsaP 20075..21100 (+) 1026 WP_135294654.1 LysM domain-containing protein Machinery gene
  E4T63_RS00100 (E4T63_00100) dprA 21183..22280 (+) 1098 WP_134785073.1 DNA-processing protein DprA Machinery gene
  E4T63_RS00105 (E4T63_00105) - 22336..22893 (+) 558 WP_003220243.1 L-threonylcarbamoyladenylate synthase -
  E4T63_RS00110 (E4T63_00110) - 23134..23805 (+) 672 WP_098966436.1 hypothetical protein -
  E4T63_RS00115 (E4T63_00115) - 23871..24848 (-) 978 WP_098966437.1 NADPH:quinone reductase -
  E4T63_RS00120 (E4T63_00120) hemF 25012..25926 (+) 915 WP_098966438.1 oxygen-dependent coproporphyrinogen oxidase -
  E4T63_RS00125 (E4T63_00125) aroE 25936..26757 (+) 822 WP_098966439.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 38449.14 Da        Isoelectric Point: 7.3211

>NTDB_id=314850 E4T63_RS00100 WP_134785073.1 21183..22280(+) (dprA) [Pseudomonas fluorescens strain LBUM677]
MLSACTPVSPAELEARLRLHRLPEIGPKRFAKLLEAFGSASKALSAPASAWRALGLPAASAEARRSPQVRDGASHALRWL
ERPGQHLLMLDQADYPALLAQIPDPPPLLFVAGDPLILEKPQLAMVGSRSASRPGMDTAAAFSRSLAGAGFVITSGLALG
IDAAAHQAALDVGGQTVGVLGTGLEKFYPQRNRRLADAMIASGSAVVSEFPLDAGPTASNFPRRNRIISGLSLGVLVVEA
SVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAVLVETIEHILEALRGWQHLPLSTDPPDSAHPLLDLLH
AAPHTSEALVESSGWALPKVLAALTELEMDGRAVCENGRWLARTR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=314850 E4T63_RS00100 WP_134785073.1 21183..22280(+) (dprA) [Pseudomonas fluorescens strain LBUM677]
ATGCTGTCTGCCTGTACGCCGGTTTCCCCTGCGGAACTGGAAGCGCGTTTGCGCCTGCACCGCTTGCCGGAAATCGGTCC
GAAACGTTTTGCCAAACTGCTTGAAGCCTTCGGCTCGGCGTCAAAAGCCCTGAGCGCGCCGGCCAGTGCCTGGCGAGCGC
TGGGTCTGCCAGCGGCGTCGGCCGAGGCCCGGCGCAGCCCGCAAGTGCGCGACGGCGCCAGCCATGCATTGCGCTGGCTA
GAGCGGCCCGGCCAGCATCTATTGATGTTGGACCAAGCGGATTATCCGGCGCTGCTGGCGCAGATCCCTGACCCGCCACC
GCTGTTGTTCGTCGCCGGTGATCCGCTGATTCTGGAAAAACCGCAACTGGCGATGGTCGGCAGTCGCAGCGCGTCGCGCC
CGGGAATGGATACCGCCGCCGCGTTTTCCCGCAGCCTCGCCGGGGCCGGTTTCGTCATCACCAGTGGTCTGGCGTTGGGT
ATCGATGCGGCTGCCCATCAAGCGGCGCTGGACGTCGGCGGGCAAACCGTCGGCGTACTCGGCACGGGTCTGGAAAAGTT
TTATCCACAGCGCAATCGCCGACTCGCCGACGCGATGATTGCCTCGGGCAGCGCAGTGGTTTCTGAGTTTCCACTGGACG
CCGGGCCAACGGCGAGCAACTTCCCTAGGCGCAACCGGATCATCAGCGGTTTGTCCCTCGGTGTGCTGGTGGTCGAGGCG
AGTGTCGCCAGCGGTTCGCTGATCACTGCCCGGCTGGCGGCGGAACAGGGCCGCGAGGTGTATGCGATTCCCGGCTCGAT
CCATCACCCCGGTGCGCGCGGCTGCCATCAGTTGATCCGCGACGGCGCGGTGCTGGTGGAAACCATCGAACACATTCTCG
AAGCCCTGCGCGGCTGGCAGCATTTGCCGTTATCCACAGACCCGCCGGATTCCGCGCATCCCTTGCTTGATCTGCTGCAC
GCCGCGCCGCACACCAGCGAAGCCTTGGTCGAAAGCAGCGGCTGGGCGTTGCCCAAAGTCCTCGCGGCGCTCACCGAGCT
GGAAATGGACGGCCGCGCAGTGTGTGAAAACGGTCGCTGGCTGGCGAGGACACGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(306-358)

DNA recombination-mediator protein A (DNA_processg_A)

(80-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.935

100

0.447
  dprA Legionella pneumophila strain ERS1305867

41.127

97.26

0.4
  dprA Neisseria gonorrhoeae strain FA1090

43.505

90.685

0.395
  dprA Neisseria gonorrhoeae MS11

43.202

90.685

0.392
  dprA Acinetobacter baylyi ADP1

39.943

96.712

0.386
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.66

96.712

0.384
  dprA Neisseria meningitidis strain C311

48.611

78.904

0.384
  dprA Neisseria meningitidis MC58

48.611

78.904

0.384
  dprA Haemophilus influenzae Rd KW20

44.805

84.384

0.378
  dprA Acinetobacter baumannii D1279779

38.92

96.438

0.375
  dprA Acinetobacter baumannii strain A118

38.92

96.438

0.375
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.371

82.74

0.367
  dprA Vibrio cholerae strain A1552

44.371

82.74

0.367
  dprA Glaesserella parasuis strain SC1401

45.238

80.548

0.364

Multiple sequence alignment