Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   E4T63_RS00095 Genome accession   NZ_CP038438
Coordinates   20075..21100 (+) Length   341 a.a.
NCBI ID   WP_135294654.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain LBUM677     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 15075..26100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS00070 (E4T63_00070) - 15220..15534 (-) 315 WP_027610275.1 tetratricopeptide repeat protein -
  E4T63_RS00075 (E4T63_00075) trkA 15686..17062 (-) 1377 WP_003220233.1 Trk system potassium transporter TrkA -
  E4T63_RS00080 (E4T63_00080) rsmB 17085..18395 (-) 1311 WP_135294652.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  E4T63_RS00085 (E4T63_00085) fmt 18392..19351 (-) 960 WP_135294653.1 methionyl-tRNA formyltransferase -
  E4T63_RS00090 (E4T63_00090) def 19409..19915 (-) 507 WP_027610272.1 peptide deformylase -
  E4T63_RS00095 (E4T63_00095) tsaP 20075..21100 (+) 1026 WP_135294654.1 LysM domain-containing protein Machinery gene
  E4T63_RS00100 (E4T63_00100) dprA 21183..22280 (+) 1098 WP_134785073.1 DNA-processing protein DprA Machinery gene
  E4T63_RS00105 (E4T63_00105) - 22336..22893 (+) 558 WP_003220243.1 L-threonylcarbamoyladenylate synthase -
  E4T63_RS00110 (E4T63_00110) - 23134..23805 (+) 672 WP_098966436.1 hypothetical protein -
  E4T63_RS00115 (E4T63_00115) - 23871..24848 (-) 978 WP_098966437.1 NADPH:quinone reductase -
  E4T63_RS00120 (E4T63_00120) hemF 25012..25926 (+) 915 WP_098966438.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37528.88 Da        Isoelectric Point: 9.3902

>NTDB_id=314849 E4T63_RS00095 WP_135294654.1 20075..21100(+) (tsaP) [Pseudomonas fluorescens strain LBUM677]
MRKTLLALLLLASAAAAQGQVQLRDGFPQQYTVVSGDTLWDISGKYLREPWQWPQLWRANPQIENPNLIYPGDTLTLRYV
NGQPQLTLNRGESRGTIKLSPRIRTSPVAEAIPSIPLKSINSFLLSNRIVDKVEDFDKAPYIVAGDAERVLSGTGDRIFA
RGHFDPNQPVYGIFRQGKVYTDPQTKEFLGINADDIGGGEIVATEGDVATLALQRTTQEVRLGDRLFSGEERSINSTFMP
SAPSTNINGLIIDVPRGVTQIGVMDVVTLNKGKRDGLAEGNVLVVMKTGETVRDRITGQPLKIPDERAGLLMVFRTYDKL
SYGLVLNASRSLAVLDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=314849 E4T63_RS00095 WP_135294654.1 20075..21100(+) (tsaP) [Pseudomonas fluorescens strain LBUM677]
ATGAGGAAAACACTACTCGCCCTGCTGCTTCTGGCTTCGGCCGCGGCTGCGCAAGGGCAAGTGCAACTCAGGGATGGTTT
TCCACAGCAATACACGGTGGTTTCGGGAGACACCCTCTGGGACATTTCCGGCAAATACCTGCGCGAGCCCTGGCAATGGC
CACAGCTGTGGCGGGCCAATCCGCAGATCGAAAACCCCAACCTGATCTACCCCGGCGACACGCTGACGCTCCGTTACGTC
AACGGCCAGCCGCAGCTGACCCTCAATCGCGGCGAGTCACGGGGCACCATCAAGCTGTCGCCACGCATCCGCACCAGCCC
GGTGGCCGAGGCGATTCCGAGCATTCCGCTGAAATCAATCAACAGTTTCCTGCTGAGCAACCGCATCGTCGACAAGGTCG
AGGACTTCGACAAGGCGCCGTATATCGTCGCCGGCGATGCCGAGCGCGTGTTGAGTGGCACTGGCGACCGGATCTTCGCC
CGGGGCCACTTCGATCCGAATCAACCGGTGTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGACCCGCAGACCAAGGA
GTTTCTCGGGATCAACGCCGACGATATCGGTGGCGGTGAAATCGTCGCCACCGAAGGCGACGTCGCCACCCTCGCCCTGC
AACGCACCACCCAGGAAGTACGTCTGGGCGATCGTCTGTTCAGCGGCGAAGAGCGCTCGATCAATTCGACTTTCATGCCC
AGCGCCCCGAGCACCAACATCAACGGCCTGATCATCGACGTGCCGCGCGGCGTCACGCAGATCGGCGTGATGGACGTGGT
CACCCTGAACAAAGGCAAGCGCGACGGTCTGGCCGAAGGCAATGTGCTGGTGGTGATGAAAACCGGGGAAACCGTGCGCG
ACCGGATCACCGGCCAGCCGCTGAAAATTCCCGATGAACGGGCCGGTCTGCTGATGGTGTTCCGTACCTACGACAAGCTC
AGTTACGGCCTCGTACTCAACGCATCGCGCTCGCTGGCGGTGCTCGACAAGGTGCGAAATCCTTAG

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

33.88

100

0.364

Multiple sequence alignment