Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   DIW83_RS01630 Genome accession   NZ_CP029351
Coordinates   341159..342157 (+) Length   332 a.a.
NCBI ID   WP_004884688.1    Uniprot ID   K9BAJ2
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336159..347157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS01600 (DIW83_01600) - 337740..337871 (-) 132 WP_102990545.1 hypothetical protein -
  DIW83_RS01605 (DIW83_01605) rpoZ 337910..338188 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DIW83_RS01610 (DIW83_01610) gmk 338261..338890 (-) 630 WP_016803891.1 guanylate kinase -
  DIW83_RS01615 (DIW83_01615) ispH 339013..339963 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DIW83_RS01620 (DIW83_01620) fimU 340132..340605 (+) 474 WP_016803890.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DIW83_RS01625 (DIW83_01625) pilV 340599..341159 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  DIW83_RS01630 (DIW83_01630) pilW 341159..342157 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  DIW83_RS01635 (DIW83_01635) pilX 342154..342969 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DIW83_RS01640 (DIW83_01640) - 344184..347153 (+) 2970 Protein_307 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 35771.28 Da        Isoelectric Point: 6.2394

>NTDB_id=291887 DIW83_RS01630 WP_004884688.1 341159..342157(+) (pilW) [Acinetobacter nosocomialis strain NCTC 8102]
MNRSFLEKQQGFTLIELMVALALGLILVAAATQLFIGGILSSRLQKANAEIQDSGIFGLDYIIRDIRLVNYGNIINPQLN
DTTPWGGIVLTGSTATNNNNVNFVPNTGTNAYIADALLSRGAGDTVSTLNNQWKGLSNIQNSSNATIQSDQLTIQFIAPS
NMTNCEGANVLAGDLVVERYFLRLDNNGSSQQDYALACDANTPSTTPTAQPTSVDGFGDAGQIILPRIDHFHVLLGAKNA
AGNFAYYTIPQYRVAAQAARDATPTQLAPRILSIQISVLARSTNNAQNKAVDPNQTFVMLDQTVHASDTSSRFLRRVYST
TIALRNAMGEKL

Nucleotide


Download         Length: 999 bp        

>NTDB_id=291887 DIW83_RS01630 WP_004884688.1 341159..342157(+) (pilW) [Acinetobacter nosocomialis strain NCTC 8102]
ATGAATCGATCATTTTTAGAAAAGCAGCAAGGATTTACCTTAATTGAACTTATGGTTGCTTTGGCTTTAGGTTTAATTCT
TGTTGCAGCTGCTACTCAATTGTTTATAGGTGGAATTTTATCAAGTCGTCTACAAAAAGCGAATGCTGAAATACAAGATA
GTGGTATTTTTGGTCTGGATTATATTATACGTGACATACGACTTGTAAATTATGGAAATATTATAAATCCTCAGTTAAAT
GATACTACTCCTTGGGGAGGGATAGTGTTAACGGGTTCTACTGCTACCAATAATAACAATGTAAATTTTGTGCCTAATAC
GGGGACTAACGCCTATATCGCAGATGCTTTATTAAGCCGTGGTGCAGGCGATACAGTAAGTACCTTAAATAACCAGTGGA
AAGGCCTTTCAAATATACAGAACAGTTCAAATGCAACTATACAGAGTGATCAGCTTACTATTCAATTTATTGCTCCTTCT
AATATGACAAATTGTGAAGGTGCAAATGTTTTGGCGGGTGATCTTGTTGTAGAGCGCTATTTTTTACGTCTCGATAATAA
TGGGAGTTCACAACAAGATTATGCCCTAGCATGTGATGCAAATACACCTTCTACCACACCTACAGCTCAACCAACATCAG
TTGATGGGTTTGGAGATGCGGGTCAAATTATATTGCCACGTATTGATCATTTTCATGTTCTATTAGGCGCGAAAAATGCA
GCTGGTAATTTTGCTTATTACACTATTCCTCAATATCGAGTGGCTGCACAAGCTGCAAGAGATGCGACCCCTACACAATT
AGCTCCACGTATCTTATCCATACAAATTTCTGTATTAGCGCGTTCTACCAATAATGCTCAAAACAAAGCAGTCGATCCTA
ATCAAACTTTTGTAATGTTAGATCAAACAGTACATGCCTCAGATACAAGTTCACGATTCTTGCGACGCGTTTATAGCACA
ACAATTGCTTTACGTAATGCAATGGGGGAAAAACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(180-326)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9BAJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

83.183

100

0.834

Multiple sequence alignment