Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | DIW83_RS01620 | Genome accession | NZ_CP029351 |
| Coordinates | 340132..340605 (+) | Length | 157 a.a. |
| NCBI ID | WP_016803890.1 | Uniprot ID | A0A1V0YNQ0 |
| Organism | Acinetobacter nosocomialis strain NCTC 8102 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 335132..345605
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DIW83_RS01595 (DIW83_01595) | - | 335595..337700 (-) | 2106 | WP_016803892.1 | RelA/SpoT family protein | - |
| DIW83_RS01600 (DIW83_01600) | - | 337740..337871 (-) | 132 | WP_102990545.1 | hypothetical protein | - |
| DIW83_RS01605 (DIW83_01605) | rpoZ | 337910..338188 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| DIW83_RS01610 (DIW83_01610) | gmk | 338261..338890 (-) | 630 | WP_016803891.1 | guanylate kinase | - |
| DIW83_RS01615 (DIW83_01615) | ispH | 339013..339963 (+) | 951 | WP_002051768.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| DIW83_RS01620 (DIW83_01620) | fimU | 340132..340605 (+) | 474 | WP_016803890.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| DIW83_RS01625 (DIW83_01625) | pilV | 340599..341159 (+) | 561 | WP_079377028.1 | type IV pilus modification protein PilV | Machinery gene |
| DIW83_RS01630 (DIW83_01630) | pilW | 341159..342157 (+) | 999 | WP_004884688.1 | PilW family protein | Machinery gene |
| DIW83_RS01635 (DIW83_01635) | pilX | 342154..342969 (+) | 816 | WP_004711686.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16856.44 Da Isoelectric Point: 9.3359
>NTDB_id=291885 DIW83_RS01620 WP_016803890.1 340132..340605(+) (fimU) [Acinetobacter nosocomialis strain NCTC 8102]
MRGITPQEGFTLVELIVTIAVMAIIAMMAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
LLNWQPTSNNTLTLKNIAADNTQSSLAITTLTFNANGVVSNITQDALISICNSRINKKKNFILTKLGALVFKAEETC
MRGITPQEGFTLVELIVTIAVMAIIAMMAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
LLNWQPTSNNTLTLKNIAADNTQSSLAITTLTFNANGVVSNITQDALISICNSRINKKKNFILTKLGALVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=291885 DIW83_RS01620 WP_016803890.1 340132..340605(+) (fimU) [Acinetobacter nosocomialis strain NCTC 8102]
ATGAGGGGAATTACTCCGCAAGAAGGGTTCACCTTAGTGGAACTCATCGTAACAATTGCAGTCATGGCTATTATTGCAAT
GATGGCTGCGCCGTCTATGTCAAATTTATTAGAAAGTAAACGTTTAGATACTAATCAAAGAGATTTAATTAGCACTCTAT
CTGAGGCGAAAAGTCAGGCTGTGCTTGGTCGTCAGAATGTTTCAGTTAATTTGAATTCAGCGGCTTCTAATACGGCCACT
TTATTAAATTGGCAACCTACTTCTAACAACACCCTAACGCTAAAAAATATAGCTGCTGATAATACCCAAAGTTCTTTAGC
TATCACTACTTTAACATTTAACGCAAATGGAGTTGTGAGTAATATTACTCAGGATGCACTTATATCTATTTGTAATTCAA
GAATAAATAAAAAGAAAAATTTTATACTTACAAAACTTGGAGCTTTGGTTTTTAAAGCTGAGGAGACATGCTAA
ATGAGGGGAATTACTCCGCAAGAAGGGTTCACCTTAGTGGAACTCATCGTAACAATTGCAGTCATGGCTATTATTGCAAT
GATGGCTGCGCCGTCTATGTCAAATTTATTAGAAAGTAAACGTTTAGATACTAATCAAAGAGATTTAATTAGCACTCTAT
CTGAGGCGAAAAGTCAGGCTGTGCTTGGTCGTCAGAATGTTTCAGTTAATTTGAATTCAGCGGCTTCTAATACGGCCACT
TTATTAAATTGGCAACCTACTTCTAACAACACCCTAACGCTAAAAAATATAGCTGCTGATAATACCCAAAGTTCTTTAGC
TATCACTACTTTAACATTTAACGCAAATGGAGTTGTGAGTAATATTACTCAGGATGCACTTATATCTATTTGTAATTCAA
GAATAAATAAAAAGAAAAATTTTATACTTACAAAACTTGGAGCTTTGGTTTTTAAAGCTGAGGAGACATGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
85.987 |
100 |
0.86 |