Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DIW83_RS01635 Genome accession   NZ_CP029351
Coordinates   342154..342969 (+) Length   271 a.a.
NCBI ID   WP_004711686.1    Uniprot ID   A0A836Z055
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337154..347969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS01600 (DIW83_01600) - 337740..337871 (-) 132 WP_102990545.1 hypothetical protein -
  DIW83_RS01605 (DIW83_01605) rpoZ 337910..338188 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  DIW83_RS01610 (DIW83_01610) gmk 338261..338890 (-) 630 WP_016803891.1 guanylate kinase -
  DIW83_RS01615 (DIW83_01615) ispH 339013..339963 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DIW83_RS01620 (DIW83_01620) fimU 340132..340605 (+) 474 WP_016803890.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DIW83_RS01625 (DIW83_01625) pilV 340599..341159 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  DIW83_RS01630 (DIW83_01630) pilW 341159..342157 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  DIW83_RS01635 (DIW83_01635) pilX 342154..342969 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DIW83_RS01640 (DIW83_01640) - 344184..347153 (+) 2970 Protein_307 PilC/PilY family type IV pilus protein -
  DIW83_RS01645 (DIW83_01645) pilY2 347166..347648 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 28881.67 Da        Isoelectric Point: 6.6293

>NTDB_id=291888 DIW83_RS01635 WP_004711686.1 342154..342969(+) (pilX) [Acinetobacter nosocomialis strain NCTC 8102]
MTHLRSKYIVQHHQKGATLIVVLIILLIVIAVGVLAIRVAIVSLKVATNSQIGQLNFQSSDTPIQLITQMDPTTLTNISN
VLGAALKENESHPGSEYNFCYKPVSTTVSFAQTRDASLLRAGTANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQIAVSIP
TDAVNDVPGSNLPRGTNASEGTALPKSMLSTQRIRVISTSFLPAYASTSMQTLQADCLSTNSAKISDNFDSSLSNKQTLA
DCLANHNVPFSTQIQEFNYTNKLTETMAPGS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=291888 DIW83_RS01635 WP_004711686.1 342154..342969(+) (pilX) [Acinetobacter nosocomialis strain NCTC 8102]
ATGACCCATTTGAGAAGCAAATATATAGTCCAACATCATCAAAAAGGTGCGACGCTTATTGTTGTGCTTATTATTTTGTT
AATTGTTATTGCTGTGGGGGTTTTAGCCATTAGGGTGGCTATTGTTTCTTTGAAAGTTGCAACAAATAGCCAAATTGGGC
AATTAAATTTTCAATCTTCTGATACTCCTATACAGCTCATCACCCAGATGGATCCAACGACGCTTACAAATATTAGTAAT
GTGTTAGGAGCAGCACTTAAAGAAAATGAGAGTCATCCTGGATCGGAATATAATTTTTGCTATAAGCCAGTTTCGACCAC
TGTAAGTTTTGCCCAAACCCGAGATGCGAGTCTACTGCGAGCAGGAACTGCTAACAATGCCGTGGTAGAGGATGGAGGAG
TGGCTGGCTTTTGTGACCTGACCACTGATTATGGAAGTAATCGTCAAGCTGTCGTTACACAAATTGCTGTAAGCATTCCA
ACAGATGCCGTTAATGATGTTCCAGGTTCAAATTTACCACGCGGAACAAATGCGTCTGAAGGTACTGCTTTACCAAAGAG
TATGCTTTCTACACAACGCATTCGAGTGATTTCAACTTCTTTTTTACCTGCTTATGCTTCTACCTCAATGCAAACTTTGC
AAGCAGATTGTTTGAGTACAAATAGTGCCAAGATCAGCGATAACTTTGATAGCTCATTAAGTAATAAACAAACGTTAGCT
GATTGTTTGGCAAATCATAACGTACCTTTTAGTACTCAGATTCAAGAATTTAACTATACCAATAAACTTACTGAAACTAT
GGCGCCAGGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836Z055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

82.353

100

0.827

Multiple sequence alignment