Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DEH83_RS03665 Genome accession   NZ_CP029207
Coordinates   741102..741518 (-) Length   138 a.a.
NCBI ID   WP_255777097.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 720158..759469 741102..741518 within 0


Gene organization within MGE regions


Location: 720158..759469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS03520 (DEH83_03510) - 720158..720337 (-) 180 WP_039677487.1 hypothetical protein -
  DEH83_RS03525 - 720494..720625 (-) 132 WP_255777072.1 hypothetical protein -
  DEH83_RS03530 (DEH83_03515) - 720753..721559 (-) 807 WP_255777073.1 lytic exoenzyme target recognition domain-containing protein -
  DEH83_RS03535 (DEH83_03520) - 721562..721846 (-) 285 WP_255777074.1 phage holin -
  DEH83_RS03540 (DEH83_03525) - 721848..722249 (-) 402 WP_247927409.1 hypothetical protein -
  DEH83_RS03545 (DEH83_03530) - 722265..722516 (-) 252 WP_247927410.1 hypothetical protein -
  DEH83_RS03550 (DEH83_03535) - 722519..722713 (-) 195 WP_255777076.1 hypothetical protein -
  DEH83_RS03555 (DEH83_03540) - 722725..726537 (-) 3813 WP_255777077.1 phage tail spike protein -
  DEH83_RS03560 (DEH83_03545) - 726538..727263 (-) 726 WP_255777079.1 phage tail protein -
  DEH83_RS03565 (DEH83_03550) - 727260..730349 (-) 3090 WP_255777080.1 phage tail tape measure protein -
  DEH83_RS03570 (DEH83_03555) - 730558..730977 (-) 420 WP_255777081.1 hypothetical protein -
  DEH83_RS03575 (DEH83_03560) - 730989..731567 (-) 579 WP_255777082.1 major tail protein -
  DEH83_RS03580 (DEH83_03565) - 731580..731903 (-) 324 WP_255777083.1 hypothetical protein -
  DEH83_RS03585 (DEH83_03570) - 731900..732250 (-) 351 WP_255777084.1 HK97 gp10 family phage protein -
  DEH83_RS03590 (DEH83_03575) - 732250..732552 (-) 303 WP_255777085.1 phage head closure protein -
  DEH83_RS03595 (DEH83_03580) - 732552..732818 (-) 267 WP_255777225.1 phage head-tail connector protein -
  DEH83_RS03600 (DEH83_03585) - 732818..733144 (-) 327 WP_255777086.1 hypothetical protein -
  DEH83_RS03605 (DEH83_03590) - 733158..734330 (-) 1173 WP_255777087.1 phage major capsid protein -
  DEH83_RS03610 (DEH83_03595) - 734323..734892 (-) 570 WP_255777088.1 HK97 family phage prohead protease -
  DEH83_RS03615 (DEH83_03600) - 734879..736069 (-) 1191 WP_255777089.1 phage portal protein -
  DEH83_RS03620 (DEH83_03605) - 736089..737795 (-) 1707 WP_255777090.1 terminase large subunit -
  DEH83_RS03625 (DEH83_03610) - 737798..738178 (-) 381 WP_117276507.1 P27 family phage terminase small subunit -
  DEH83_RS03630 (DEH83_03615) - 738357..738680 (-) 324 WP_255777091.1 HNH endonuclease -
  DEH83_RS03635 (DEH83_03620) - 738849..739391 (-) 543 WP_117276506.1 site-specific integrase -
  DEH83_RS03640 (DEH83_03625) - 739517..739981 (-) 465 WP_255777092.1 hypothetical protein -
  DEH83_RS03645 (DEH83_03630) - 739959..740180 (-) 222 WP_255777093.1 hypothetical protein -
  DEH83_RS03650 (DEH83_03635) - 740286..740465 (-) 180 WP_255777094.1 hypothetical protein -
  DEH83_RS03655 (DEH83_03640) - 740456..740710 (-) 255 WP_255777095.1 hypothetical protein -
  DEH83_RS03660 (DEH83_03645) - 740697..741086 (-) 390 WP_255777096.1 hypothetical protein -
  DEH83_RS03665 (DEH83_03650) ssb 741102..741518 (-) 417 WP_255777097.1 single-stranded DNA-binding protein Machinery gene
  DEH83_RS03670 (DEH83_03655) - 741511..741939 (-) 429 WP_255777098.1 YopX family protein -
  DEH83_RS03675 (DEH83_03660) - 741942..742190 (-) 249 WP_255777099.1 hypothetical protein -
  DEH83_RS03680 (DEH83_03665) - 742180..742509 (-) 330 WP_255777100.1 DUF3310 domain-containing protein -
  DEH83_RS03685 (DEH83_03670) - 742511..742843 (-) 333 WP_255777101.1 DUF1372 family protein -
  DEH83_RS03690 (DEH83_03675) - 742840..743334 (-) 495 WP_255777102.1 MazG-like family protein -
  DEH83_RS03695 (DEH83_03680) - 743327..743509 (-) 183 WP_057489526.1 hypothetical protein -
  DEH83_RS03700 (DEH83_03685) - 743502..743759 (-) 258 WP_255777103.1 hypothetical protein -
  DEH83_RS03705 (DEH83_03690) - 743771..744445 (-) 675 WP_255777104.1 DNA methyltransferase -
  DEH83_RS03710 (DEH83_03695) - 744445..745266 (-) 822 WP_255777105.1 ATP-binding protein -
  DEH83_RS03715 (DEH83_03700) - 745267..746013 (-) 747 WP_255777106.1 conserved phage C-terminal domain-containing protein -
  DEH83_RS03720 (DEH83_03705) dnaB 746013..747347 (-) 1335 WP_255777107.1 replicative DNA helicase -
  DEH83_RS03725 (DEH83_03710) - 747356..747574 (-) 219 WP_255777108.1 hypothetical protein -
  DEH83_RS03730 (DEH83_03715) - 747599..747883 (-) 285 WP_057489520.1 hypothetical protein -
  DEH83_RS03735 (DEH83_03720) - 747905..748270 (-) 366 WP_255777109.1 hypothetical protein -
  DEH83_RS03740 (DEH83_03725) - 748270..748482 (-) 213 WP_255777111.1 helix-turn-helix transcriptional regulator -
  DEH83_RS03745 (DEH83_03730) - 748537..749220 (+) 684 WP_255777112.1 hypothetical protein -
  DEH83_RS03750 (DEH83_03735) - 749392..749922 (+) 531 WP_255777113.1 hypothetical protein -
  DEH83_RS03755 - 749919..750062 (-) 144 WP_255777114.1 hypothetical protein -
  DEH83_RS03760 (DEH83_03740) - 750350..750697 (+) 348 WP_255777115.1 helix-turn-helix domain-containing protein -
  DEH83_RS03765 (DEH83_03745) - 750699..751814 (+) 1116 WP_255777116.1 hypothetical protein -
  DEH83_RS03770 (DEH83_03750) - 752017..752400 (+) 384 WP_255777117.1 ImmA/IrrE family metallo-endopeptidase -
  DEH83_RS03775 (DEH83_03755) - 752517..753584 (+) 1068 WP_255777118.1 site-specific integrase -
  DEH83_RS03780 (DEH83_03760) - 753931..754716 (-) 786 WP_255777119.1 hypothetical protein -
  DEH83_RS03785 (DEH83_03765) nusG 754924..755460 (-) 537 WP_003071098.1 transcription termination/antitermination protein NusG -
  DEH83_RS03790 (DEH83_03770) secE 755605..755781 (-) 177 WP_003071100.1 preprotein translocase subunit SecE -
  DEH83_RS03795 (DEH83_03775) rpmG 755791..755943 (-) 153 WP_020997544.1 50S ribosomal protein L33 -
  DEH83_RS03800 (DEH83_03780) pbp2a 755993..758212 (-) 2220 WP_255777121.1 penicillin-binding protein PBP2A -
  DEH83_RS03805 (DEH83_03785) - 758350..759219 (+) 870 WP_255777122.1 RluA family pseudouridine synthase -
  DEH83_RS03810 (DEH83_03790) - 759260..759469 (-) 210 WP_006269262.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15788.64 Da        Isoelectric Point: 4.5865

>NTDB_id=291173 DEH83_RS03665 WP_255777097.1 741102..741518(-) (ssb) [Streptococcus constellatus strain TCV107]
MINNVVLIGRLTRDVELRYTPSNVAVATFNLAVNRNFKNQDGEREADFINCVMWQKSAENLANWTRKGMLIGITGRIQTR
SYENQQGQRVYVTEVVADNFQLLESRDKSANHSSMDEQMPPAFENSQPMDISDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=291173 DEH83_RS03665 WP_255777097.1 741102..741518(-) (ssb) [Streptococcus constellatus strain TCV107]
ATGATTAACAATGTTGTATTGATTGGTCGCTTGACCCGTGATGTTGAGCTACGATATACGCCCTCAAATGTAGCTGTCGC
GACTTTCAACTTGGCTGTCAATCGTAATTTTAAAAATCAAGATGGCGAGCGAGAAGCTGATTTTATAAATTGTGTGATGT
GGCAGAAGTCGGCTGAGAATCTAGCTAACTGGACACGAAAAGGTATGTTGATTGGCATTACTGGACGAATCCAAACCAGA
AGTTATGAAAATCAGCAAGGTCAGCGTGTTTATGTTACAGAAGTCGTAGCGGACAATTTCCAGCTTCTGGAAAGTCGCGA
CAAATCTGCTAATCATAGCAGCATGGACGAGCAGATGCCACCAGCTTTTGAAAATAGCCAGCCAATGGACATCTCGGACG
ATGATCTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.681
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.837

100

0.609
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.552

100

0.493
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.755

100

0.464
  ssbB/cilA Streptococcus mitis NCTC 12261

44.755

100

0.464
  ssbB/cilA Streptococcus pneumoniae D39

44.056

100

0.457
  ssbB/cilA Streptococcus pneumoniae Rx1

44.056

100

0.457
  ssbB/cilA Streptococcus pneumoniae R6

44.056

100

0.457
  ssbB/cilA Streptococcus mitis SK321

44.056

100

0.457
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.752

81.884

0.457
  ssbA Streptococcus mutans UA159

42.657

100

0.442
  ssb Vibrio cholerae strain A1552

30.058

100

0.377
  ssb Glaesserella parasuis strain SC1401

28.249

100

0.362
  ssbB Lactococcus lactis subsp. cremoris KW2

47.619

76.087

0.362

Multiple sequence alignment