Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ASUC_RS09440 Genome accession   NC_009655
Coordinates   1999249..2000202 (-) Length   317 a.a.
NCBI ID   WP_041834817.1    Uniprot ID   -
Organism   Actinobacillus succinogenes 130Z     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1994249..2005202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS09415 (Asuc_1818) - 1994479..1995765 (+) 1287 WP_012073546.1 AmpG family muropeptide MFS transporter -
  ASUC_RS09420 (Asuc_1819) adk 1995901..1996545 (+) 645 WP_012073547.1 adenylate kinase -
  ASUC_RS09425 (Asuc_1820) - 1996606..1997511 (-) 906 WP_012073548.1 siderophore ABC transporter substrate-binding protein -
  ASUC_RS09430 (Asuc_1821) - 1997524..1998294 (-) 771 WP_012073549.1 ABC transporter ATP-binding protein -
  ASUC_RS09435 (Asuc_1822) - 1998291..1999244 (-) 954 WP_143228900.1 iron chelate uptake ABC transporter family permease subunit -
  ASUC_RS09440 (Asuc_1823) ceuB 1999249..2000202 (-) 954 WP_041834817.1 ABC transporter permease Machinery gene
  ASUC_RS09445 (Asuc_1824) mepM 2000330..2001769 (-) 1440 WP_012073552.1 murein DD-endopeptidase MepM -
  ASUC_RS09450 (Asuc_1825) znuC 2001962..2002756 (+) 795 WP_012073553.1 zinc ABC transporter ATP-binding protein ZnuC -
  ASUC_RS09455 (Asuc_1826) znuB 2002769..2003554 (+) 786 WP_012073554.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34644.75 Da        Isoelectric Point: 9.6064

>NTDB_id=28529 ASUC_RS09440 WP_041834817.1 1999249..2000202(-) (ceuB) [Actinobacillus succinogenes 130Z]
MLKRRYLFCLLILLSLISLFIGVSTVNIEGLLHFDADQWSIFLVSRLPRLVSILIAGSALSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAILLFPSASMLLKTAIAVAVSFSGTLLFMTILSHLKFKDAIFVPLVGIMFGNIISSIAAFIAYKEDL
LQNLSGWLQGDFSLVMAGRYELLYFSIPALLVAYLFANRFSIVGMGQDFATNLGLNYKQVMYLGLAIVATVSSVIIISVG
VIPFLGLIIPNMVTLYLGDNLKKILSHTALLGAVFVLICDIFGRLIIYPYEIAINTVVGVLGSGIFLVLLFKRYQHG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=28529 ASUC_RS09440 WP_041834817.1 1999249..2000202(-) (ceuB) [Actinobacillus succinogenes 130Z]
ATGTTGAAGCGTCGTTATCTTTTTTGCCTCCTCATTTTACTTTCTCTGATATCTTTATTTATTGGCGTAAGCACGGTAAA
TATTGAAGGATTATTACATTTTGACGCTGATCAATGGTCAATTTTTCTGGTCAGTCGCTTACCGCGCTTAGTCAGTATTT
TAATTGCCGGTTCGGCATTAAGTATCTGCGGGCTCGTTATGCAGCAGCTGAGTCGCAACCGGTTTGTTTCGCCTACCACA
GCAGGCACGATGGATTCGGCTCGTTTGGGCATTCTGATTGCGATATTGCTGTTTCCTTCGGCCTCAATGTTACTGAAAAC
GGCGATCGCCGTAGCGGTATCTTTTTCAGGCACATTGCTGTTTATGACGATTCTGTCTCATTTGAAATTTAAAGATGCTA
TTTTTGTACCTTTGGTAGGAATTATGTTTGGGAATATTATCAGCTCGATTGCGGCATTTATCGCCTATAAAGAGGATTTG
CTGCAAAATTTATCGGGGTGGTTGCAGGGCGATTTTTCATTGGTAATGGCGGGGCGTTATGAACTGTTGTATTTCAGTAT
TCCCGCTTTGCTGGTGGCGTATTTATTTGCCAATCGGTTTTCTATTGTGGGAATGGGGCAGGATTTTGCTACCAATCTGG
GGTTGAATTACAAGCAGGTGATGTATTTAGGCTTGGCGATCGTAGCGACGGTATCGTCGGTTATTATTATTTCGGTGGGC
GTGATTCCGTTTCTGGGGTTGATTATTCCCAATATGGTAACGCTTTATCTGGGAGACAACCTGAAGAAAATTCTTTCTCA
TACCGCTTTGCTCGGAGCGGTATTCGTTCTGATATGCGATATTTTCGGACGTCTGATTATTTATCCTTATGAAATCGCCA
TAAATACTGTAGTAGGCGTGTTGGGCAGCGGCATTTTTTTGGTTCTTTTATTCAAGCGGTACCAGCATGGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.42

100

0.514

Multiple sequence alignment