Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   C0L89_RS16705 Genome accession   NZ_CP025609
Coordinates   3527042..3527467 (-) Length   141 a.a.
NCBI ID   WP_024743355.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain MAI1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3522042..3532467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0L89_RS16690 (C0L89_16670) - 3523176..3524702 (-) 1527 WP_024743352.1 membrane protein -
  C0L89_RS16695 (C0L89_16675) - 3524672..3525247 (-) 576 WP_233488061.1 hypothetical protein -
  C0L89_RS16700 (C0L89_16680) - 3525318..3526907 (-) 1590 WP_024743354.1 phosphoethanolamine transferase -
  C0L89_RS16705 (C0L89_16685) pilA2 3527042..3527467 (-) 426 WP_024743355.1 pilin Machinery gene
  C0L89_RS16710 (C0L89_16690) pilC 3527823..3529082 (+) 1260 WP_024743356.1 type II secretion system F family protein Machinery gene
  C0L89_RS16715 (C0L89_16695) - 3529089..3529952 (+) 864 WP_024743357.1 A24 family peptidase -
  C0L89_RS16720 (C0L89_16700) coaE 3529966..3530571 (+) 606 WP_024743358.1 dephospho-CoA kinase -
  C0L89_RS16725 (C0L89_16705) - 3530798..3532132 (-) 1335 WP_033003293.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14387.68 Da        Isoelectric Point: 9.0090

>NTDB_id=262995 C0L89_RS16705 WP_024743355.1 3527042..3527467(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain MAI1]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVTETSSSLGGLTNVTLANSGYAFPGATK
YVSGVSIADGTGVVTVTSTVPNAAGSILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=262995 C0L89_RS16705 WP_024743355.1 3527042..3527467(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain MAI1]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGCGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTTCATCGTCGCTCGGCGGTCTTACTAATGTTACTCTCGCGAATTCGGGCTACGCATTCCCGGGTGCCACGAAG
TATGTCAGCGGCGTCAGCATCGCCGATGGTACGGGCGTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTAGCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.471

96.454

0.496
  pilA2 Legionella pneumophila strain ERS1305867

51.471

96.454

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

39.394

100

0.461
  pilE Neisseria gonorrhoeae MS11

39.752

100

0.454
  pilE Neisseria gonorrhoeae strain FA1090

39.264

100

0.454
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.514

100

0.44
  comP Acinetobacter baylyi ADP1

41.497

100

0.433
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.356

100

0.397
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.481

95.745

0.397
  pilA Pseudomonas aeruginosa PAK

35.897

100

0.397
  pilA/pilA1 Eikenella corrodens VA1

36.667

100

0.39
  pilA Acinetobacter baumannii strain A118

36.552

100

0.376
  pilA Glaesserella parasuis strain SC1401

35.374

100

0.369

Multiple sequence alignment