Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | CU052_RS00645 | Genome accession | NZ_CP025537 |
| Coordinates | 167540..167779 (-) | Length | 79 a.a. |
| NCBI ID | WP_234352423.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain 345 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 162540..172779
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CU052_RS00620 (CU052_01020) | - | 162986..163906 (+) | 921 | Protein_114 | IS5 family transposase | - |
| CU052_RS00625 (CU052_01025) | yfbR | 164248..164841 (-) | 594 | WP_101904108.1 | 5'-deoxynucleotidase | - |
| CU052_RS00630 (CU052_01030) | - | 165157..166164 (+) | 1008 | Protein_116 | anti-phage deoxyguanosine triphosphatase | - |
| CU052_RS00635 (CU052_01035) | - | 166215..166832 (-) | 618 | WP_017188356.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| CU052_RS00640 (CU052_01040) | rrtA | 166836..167387 (+) | 552 | WP_199828262.1 | rhombosortase | - |
| CU052_RS00645 (CU052_01045) | comEA | 167540..167779 (-) | 240 | WP_234352423.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| CU052_RS00650 (CU052_01050) | - | 167823..169169 (-) | 1347 | WP_407029479.1 | ISNCY family transposase | - |
| CU052_RS00660 (CU052_01060) | ppiD | 169500..171359 (-) | 1860 | WP_101904110.1 | peptidylprolyl isomerase | - |
| CU052_RS00665 (CU052_01065) | - | 171575..171847 (-) | 273 | WP_005430934.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 79 a.a. Molecular weight: 8603.94 Da Isoelectric Point: 9.5414
>NTDB_id=262379 CU052_RS00645 WP_234352423.1 167540..167779(-) (comEA) [Vibrio harveyi strain 345]
MVATNTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLTKVKGIGDATVKKNEERILL
MVATNTKAAKYEGIEITVNVNTASAQEIATMLKGIGEKKAKDIVEYRNEHGPFKTVADLTKVKGIGDATVKKNEERILL
Nucleotide
Download Length: 240 bp
>NTDB_id=262379 CU052_RS00645 WP_234352423.1 167540..167779(-) (comEA) [Vibrio harveyi strain 345]
ATTGTTGCAACAAACACAAAAGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGA
GATTGCCACCATGCTAAAGGGTATTGGTGAGAAAAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTA
AAACCGTTGCGGATCTGACCAAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
ATTGTTGCAACAAACACAAAAGCAGCTAAGTACGAAGGTATCGAGATTACGGTAAACGTAAATACAGCTTCAGCGCAAGA
GATTGCCACCATGCTAAAGGGTATTGGTGAGAAAAAAGCGAAAGATATCGTCGAATATCGTAATGAACACGGTCCTTTTA
AAACCGTTGCGGATCTGACCAAAGTGAAGGGCATTGGCGATGCCACGGTGAAAAAGAATGAAGAGCGTATTTTGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
85.526 |
96.203 |
0.823 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
80.769 |
98.734 |
0.797 |
| comEA | Vibrio cholerae strain A1552 |
67.647 |
86.076 |
0.582 |
| comEA | Vibrio cholerae C6706 |
67.647 |
86.076 |
0.582 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
54.839 |
78.481 |
0.43 |
| comEA | Acinetobacter baylyi ADP1 |
47.222 |
91.139 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
51.613 |
78.481 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
53.333 |
75.949 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
53.333 |
75.949 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
53.333 |
75.949 |
0.405 |
| comE | Neisseria gonorrhoeae MS11 |
53.333 |
75.949 |
0.405 |
| comEA | Acinetobacter baumannii D1279779 |
48.387 |
78.481 |
0.38 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
54.545 |
69.62 |
0.38 |
| comEA | Acinetobacter baumannii strain A118 |
46.774 |
78.481 |
0.367 |