Detailed information NTG0262116

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: LLG50_RS10730
• Genome accession: NZ_CP025500
• Coordinates: 2171741..2172124 (-)
• Length: 127 a.a.
• NCBI ID: WP_012898622.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain G50
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2166741..2177124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLG50_RS10690 (LLG50_10690)	-	2167277..2168086 (-)	810	WP_014570791.1	metal ABC transporter permease	-
LLG50_RS10695 (LLG50_10695)	-	2168079..2168816 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
LLG50_RS10700 (LLG50_10700)	-	2168993..2169835 (-)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
LLG50_RS10705 (LLG50_10705)	-	2169832..2170269 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
LLG50_RS10710 (LLG50_10710)	comGG	2170350..2170634 (-)	285	WP_017865155.1	competence type IV pilus minor pilin ComGG	Machinery gene
LLG50_RS10715 (LLG50_10715)	comGF	2170673..2171119 (-)	447	WP_058203710.1	competence type IV pilus minor pilin ComGF	Machinery gene
LLG50_RS10720 (LLG50_10720)	comGE	2171082..2171378 (-)	297	WP_033900709.1	competence type IV pilus minor pilin ComGE	Machinery gene
LLG50_RS10725 (LLG50_10725)	comGD	2171350..2171781 (-)	432	WP_103055168.1	competence type IV pilus minor pilin ComGD	Machinery gene
LLG50_RS10730 (LLG50_10730)	comGC	2171741..2172124 (-)	384	WP_012898622.1	competence type IV pilus major pilin ComGC	Machinery gene
LLG50_RS10735 (LLG50_10735)	comGB	2172138..2173211 (-)	1074	WP_080735950.1	competence type IV pilus assembly protein ComGB	Machinery gene
LLG50_RS10740 (LLG50_10740)	comGA	2173105..2174043 (-)	939	WP_033900707.1	competence type IV pilus ATPase ComGA	Machinery gene

Sequence

Protein

• Length: 127 a.a.
• Molecular weight: 14825.41 Da
• Isoelectric Point: 8.4563

>NTDB_id=262116 LLG50_RS10730 WP_012898622.1 2171741..2172124(-) (comGC) [Lactococcus lactis subsp. lactis strain G50]
MERTKKFILKKIQKIFLFVKICEKKCRQKELRAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA
QLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 384 bp

>NTDB_id=262116 LLG50_RS10730 WP_012898622.1 2171741..2172124(-) (comGC) [Lactococcus lactis subsp. lactis strain G50]
ATGGAAAGAACTAAGAAGTTTATTTTAAAGAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG
TCAGAAAGAGCTAAGAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG
TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCT
CAACTTTATGAATTAGATCATGATGATGAGAAGCCGAGTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA
AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (32-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comYC	Streptococcus mutans UA159	56.436	79.528	0.449
comYC	Streptococcus mutans UA140	56.436	79.528	0.449
comGC/cglC	Streptococcus mitis SK321	55.446	79.528	0.441
comYC	Streptococcus gordonii str. Challis substr. CH1	55.556	77.953	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae Rx1	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae D39	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae R6	53.465	79.528	0.425
comGC/cglC	Streptococcus mitis NCTC 12261	57.303	70.079	0.402
comYC	Streptococcus suis isolate S10	55.682	69.291	0.386