Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LLG50_RS10725 Genome accession   NZ_CP025500
Coordinates   2171350..2171781 (-) Length   143 a.a.
NCBI ID   WP_103055168.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166350..2176781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS10685 (LLG50_10685) - 2166373..2167239 (+) 867 WP_103055167.1 RluA family pseudouridine synthase -
  LLG50_RS10690 (LLG50_10690) - 2167277..2168086 (-) 810 WP_014570791.1 metal ABC transporter permease -
  LLG50_RS10695 (LLG50_10695) - 2168079..2168816 (-) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  LLG50_RS10700 (LLG50_10700) - 2168993..2169835 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  LLG50_RS10705 (LLG50_10705) - 2169832..2170269 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  LLG50_RS10710 (LLG50_10710) comGG 2170350..2170634 (-) 285 WP_017865155.1 competence type IV pilus minor pilin ComGG Machinery gene
  LLG50_RS10715 (LLG50_10715) comGF 2170673..2171119 (-) 447 WP_058203710.1 competence type IV pilus minor pilin ComGF Machinery gene
  LLG50_RS10720 (LLG50_10720) comGE 2171082..2171378 (-) 297 WP_033900709.1 competence type IV pilus minor pilin ComGE Machinery gene
  LLG50_RS10725 (LLG50_10725) comGD 2171350..2171781 (-) 432 WP_103055168.1 competence type IV pilus minor pilin ComGD Machinery gene
  LLG50_RS10730 (LLG50_10730) comGC 2171741..2172124 (-) 384 WP_012898622.1 competence type IV pilus major pilin ComGC Machinery gene
  LLG50_RS10735 (LLG50_10735) comGB 2172138..2173211 (-) 1074 WP_080735950.1 competence type IV pilus assembly protein ComGB Machinery gene
  LLG50_RS10740 (LLG50_10740) comGA 2173105..2174043 (-) 939 WP_033900707.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16562.59 Da        Isoelectric Point: 9.6891

>NTDB_id=262115 LLG50_RS10725 WP_103055168.1 2171350..2171781(-) (comGD) [Lactococcus lactis subsp. lactis strain G50]
MIRIKMKNEILMTRAFTLLESLLVLLIISFITTLFSLEIIQTVHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQ
ELICEDRSITIPKEVSVKDFTVKFDDKGGNSSLQKLTIFLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 432 bp        

>NTDB_id=262115 LLG50_RS10725 WP_103055168.1 2171350..2171781(-) (comGD) [Lactococcus lactis subsp. lactis strain G50]
ATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAGAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGAT
TATTTCTTTTATCACTACTCTTTTTTCTTTAGAAATAATACAAACAGTCCATCTTTTTAAGGGAGAACTGTTTGTTCTCC
AGTTTGAAAATTTCTATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAA
GAATTAATCTGTGAAGATAGAAGTATCACAATTCCAAAGGAGGTATCAGTTAAAGATTTTACAGTTAAATTTGATGATAA
GGGAGGGAATTCTAGCTTACAAAAACTCACAATTTTTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAG
GCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

67.133

100

0.671
  comYD Streptococcus gordonii str. Challis substr. CH1

39.007

98.601

0.385
  comYD Streptococcus mutans UA140

40.625

89.51

0.364
  comYD Streptococcus mutans UA159

40.625

89.51

0.364

Multiple sequence alignment