Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   DR994_RS06745 Genome accession   NZ_CP030927
Coordinates   1308574..1309071 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain CS9     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303574..1314071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR994_RS06725 (DR994_06905) - 1303619..1305223 (-) 1605 WP_002949230.1 CTP synthase -
  DR994_RS06730 (DR994_06910) rpoE 1305474..1306055 (-) 582 WP_022096518.1 DNA-directed RNA polymerase subunit delta -
  DR994_RS06735 (DR994_06915) tig 1306213..1307496 (-) 1284 WP_011225339.1 trigger factor -
  DR994_RS06740 (DR994_06920) - 1307632..1308474 (+) 843 WP_004197272.1 mechanosensitive ion channel family protein -
  DR994_RS06745 (DR994_06925) comX 1308574..1309071 (-) 498 WP_002949220.1 sigma factor Regulator
  DR994_RS06750 (DR994_06930) - 1309378..1309467 (-) 90 Protein_1299 IS200/IS605 family transposase -
  DR994_RS09685 (DR994_06935) - 1309825..1310289 (+) 465 Protein_1300 transposase family protein -
  DR994_RS06760 (DR994_06940) - 1310549..1311739 (-) 1191 WP_002949216.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  DR994_RS06765 (DR994_06945) - 1311821..1312147 (-) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  DR994_RS06770 (DR994_06950) - 1312336..1312658 (+) 323 Protein_1303 transposase -
  DR994_RS06775 (DR994_06955) - 1312743..1312964 (-) 222 WP_002948904.1 DUF4649 family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=261798 DR994_RS06745 WP_002949220.1 1308574..1309071(-) (comX) [Streptococcus thermophilus strain CS9]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=261798 DR994_RS06745 WP_002949220.1 1308574..1309071(-) (comX) [Streptococcus thermophilus strain CS9]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.