Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | ABO_RS14630 | Genome accession | NC_008260 |
| Coordinates | 676258..676704 (+) | Length | 148 a.a. |
| NCBI ID | WP_011587900.1 | Uniprot ID | Q0VRY5 |
| Organism | Alcanivorax borkumensis SK2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 671258..681704
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABO_RS03160 (ABO_0612) | pilD | 671910..672785 (-) | 876 | WP_011587897.1 | prepilin peptidase | Machinery gene |
| ABO_RS03165 (ABO_0613) | pilC | 672788..674014 (-) | 1227 | WP_035460653.1 | type II secretion system F family protein | Machinery gene |
| ABO_RS03170 (ABO_0614) | pilB | 674017..675723 (-) | 1707 | WP_011587899.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABO_RS14630 (ABO_0615) | comP | 676258..676704 (+) | 447 | WP_011587900.1 | pilin | Machinery gene |
| ABO_RS03180 (ABO_0616) | - | 676720..678087 (+) | 1368 | WP_041704871.1 | O-antigen ligase family protein | - |
| ABO_RS03185 (ABO_0617) | nadC | 678143..678985 (-) | 843 | WP_011587902.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ABO_RS03190 (ABO_0618) | - | 679101..680438 (-) | 1338 | WP_011587903.1 | alanine/glycine:cation symporter family protein | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15175.15 Da Isoelectric Point: 4.0932
>NTDB_id=26165 ABO_RS14630 WP_011587900.1 676258..676704(+) (comP) [Alcanivorax borkumensis SK2]
MKKQMQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKMSEVIGFAASAKTAVTECIQNDNATAGCNSNSAVGMDEAE
NITSTYVESVTVGADGQVVVAIQGTNDDTLDAASISLTPSLSSGGGVSWSCAPSATSINKFLPASCRS
MKKQMQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKMSEVIGFAASAKTAVTECIQNDNATAGCNSNSAVGMDEAE
NITSTYVESVTVGADGQVVVAIQGTNDDTLDAASISLTPSLSSGGGVSWSCAPSATSINKFLPASCRS
Nucleotide
Download Length: 447 bp
>NTDB_id=26165 ABO_RS14630 WP_011587900.1 676258..676704(+) (comP) [Alcanivorax borkumensis SK2]
ATGAAGAAGCAAATGCAACAGGGTTTCACCCTTATTGAGCTGATGATTGTAGTTGCTATCATCGGTATCTTGGCTGCCGT
GGCTTTGCCTGCTTACCAGGATTATACAACTCGTGCAAAAATGTCAGAAGTTATTGGTTTTGCTGCATCCGCTAAAACTG
CGGTGACTGAATGTATCCAGAATGATAATGCGACGGCAGGTTGCAACTCTAATAGCGCAGTTGGAATGGATGAGGCCGAA
AACATTACCAGTACGTATGTAGAGTCTGTCACTGTTGGTGCTGATGGACAGGTGGTGGTTGCAATCCAAGGAACCAATGA
TGACACTCTTGATGCGGCATCTATTAGCTTGACTCCAAGCCTGAGTTCTGGTGGTGGTGTTAGCTGGAGCTGCGCACCTT
CTGCTACAAGTATTAACAAGTTCTTGCCAGCTAGCTGCCGCTCTTAA
ATGAAGAAGCAAATGCAACAGGGTTTCACCCTTATTGAGCTGATGATTGTAGTTGCTATCATCGGTATCTTGGCTGCCGT
GGCTTTGCCTGCTTACCAGGATTATACAACTCGTGCAAAAATGTCAGAAGTTATTGGTTTTGCTGCATCCGCTAAAACTG
CGGTGACTGAATGTATCCAGAATGATAATGCGACGGCAGGTTGCAACTCTAATAGCGCAGTTGGAATGGATGAGGCCGAA
AACATTACCAGTACGTATGTAGAGTCTGTCACTGTTGGTGCTGATGGACAGGTGGTGGTTGCAATCCAAGGAACCAATGA
TGACACTCTTGATGCGGCATCTATTAGCTTGACTCCAAGCCTGAGTTCTGGTGGTGGTGTTAGCTGGAGCTGCGCACCTT
CTGCTACAAGTATTAACAAGTTCTTGCCAGCTAGCTGCCGCTCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
48.366 |
100 |
0.5 |
| pilA/pilA1 | Eikenella corrodens VA1 |
41.212 |
100 |
0.459 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
41.875 |
100 |
0.453 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
41.139 |
100 |
0.439 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.554 |
100 |
0.432 |
| pilE | Neisseria gonorrhoeae MS11 |
39.375 |
100 |
0.426 |
| pilA2 | Legionella pneumophila str. Paris |
43.662 |
95.946 |
0.419 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
43.662 |
95.946 |
0.419 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.255 |
100 |
0.385 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.568 |
93.919 |
0.372 |
| pilA | Haemophilus influenzae 86-028NP |
36.242 |
100 |
0.365 |