Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABO_RS03165 Genome accession   NC_008260
Coordinates   672788..674014 (-) Length   408 a.a.
NCBI ID   WP_035460653.1    Uniprot ID   A0AAD1EXY1
Organism   Alcanivorax borkumensis SK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 667788..679014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABO_RS03140 (ABO_0608) argJ 668549..669772 (+) 1224 WP_011587893.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ABO_RS03145 (ABO_0609) - 669953..670891 (+) 939 WP_011587894.1 Nudix family hydrolase -
  ABO_RS03150 (ABO_0610) - 671005..671205 (-) 201 WP_011587895.1 DNA gyrase inhibitor YacG -
  ABO_RS03155 (ABO_0611) coaE 671227..671847 (-) 621 WP_011587896.1 dephospho-CoA kinase -
  ABO_RS03160 (ABO_0612) pilD 671910..672785 (-) 876 WP_011587897.1 prepilin peptidase Machinery gene
  ABO_RS03165 (ABO_0613) pilC 672788..674014 (-) 1227 WP_035460653.1 type II secretion system F family protein Machinery gene
  ABO_RS03170 (ABO_0614) pilB 674017..675723 (-) 1707 WP_011587899.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABO_RS14630 (ABO_0615) comP 676258..676704 (+) 447 WP_011587900.1 pilin Machinery gene
  ABO_RS03180 (ABO_0616) - 676720..678087 (+) 1368 WP_041704871.1 O-antigen ligase family protein -
  ABO_RS03185 (ABO_0617) nadC 678143..678985 (-) 843 WP_011587902.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44263.29 Da        Isoelectric Point: 9.4908

>NTDB_id=26146 ABO_RS03165 WP_035460653.1 672788..674014(-) (pilC) [Alcanivorax borkumensis SK2]
MATKSTQKKLATFTYEGVDRQGKKVKGETSGKGAALVRAELRKQGINAKKVAKKREINLGGKKKVTPMDIAIFTRQMATM
MKAGVPLVQAFEIVADGLDNPAMKVVVMKLKTEVEGGNNFAGALRMHPLLFDDLYCSLVDAGEQSGALETMLDRVALYKE
KSEALKQKIKKALKYPIAVICVAVIVTAILLIKVVPTFKELFEGFGAELPAFTQFVINLSEGLQSNFLIIILSLIGFSIA
FNEARKRSEGCRNWIDRTLLKLPIIGDITFKATIARYARTLSTTFAAGVPLIDALDACAGATGNVIYRKAVLQIKEDVST
GQQLQFAMRSTGVFPSMALQMTAIGEESGALDAMLEKVAIYYEDEVDNAVDGLTSMMEPLIMSVLGVLIGGLIIAMYLPI
FQMGQVVG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=26146 ABO_RS03165 WP_035460653.1 672788..674014(-) (pilC) [Alcanivorax borkumensis SK2]
ATGGCGACTAAATCAACACAAAAAAAATTAGCCACTTTTACCTATGAAGGCGTGGACCGTCAGGGAAAAAAAGTTAAAGG
GGAAACCTCAGGTAAAGGTGCCGCACTGGTTCGTGCGGAACTACGCAAGCAAGGCATCAATGCAAAAAAAGTAGCAAAAA
AGCGTGAGATAAATTTGGGGGGTAAAAAAAAGGTCACCCCCATGGATATTGCTATTTTTACCCGCCAAATGGCCACAATG
ATGAAAGCCGGTGTACCTTTGGTGCAAGCTTTTGAGATTGTTGCTGATGGGCTAGACAACCCAGCAATGAAGGTTGTCGT
AATGAAGCTAAAGACAGAAGTAGAGGGGGGGAATAATTTTGCTGGCGCACTACGAATGCACCCACTTCTTTTCGATGATT
TATATTGCAGCCTTGTCGACGCAGGAGAACAATCGGGCGCCCTCGAAACAATGCTGGACCGGGTAGCTCTTTACAAAGAA
AAGAGTGAAGCCTTAAAGCAAAAAATCAAGAAAGCCTTAAAGTACCCAATTGCCGTTATTTGTGTTGCAGTTATCGTTAC
AGCAATCCTCCTAATAAAGGTAGTGCCAACTTTTAAAGAACTGTTTGAAGGATTTGGCGCTGAGCTACCCGCTTTTACTC
AATTCGTAATTAACCTATCCGAAGGGCTTCAATCTAACTTTCTTATAATCATTCTATCCCTAATCGGTTTTTCCATCGCA
TTTAACGAGGCACGAAAGCGTTCGGAAGGGTGTCGAAACTGGATAGATCGTACACTACTGAAGCTTCCTATCATCGGCGA
CATTACCTTTAAAGCGACTATTGCTCGTTACGCCCGCACGCTCTCCACTACTTTTGCCGCAGGCGTTCCGCTGATTGATG
CTCTAGATGCCTGTGCAGGAGCCACAGGCAACGTAATTTATCGAAAAGCTGTATTACAAATAAAAGAAGACGTTTCCACC
GGACAGCAACTACAGTTCGCTATGCGCAGCACAGGTGTTTTCCCCTCCATGGCACTACAAATGACCGCCATTGGTGAGGA
ATCAGGGGCACTTGACGCCATGCTAGAGAAAGTGGCGATCTACTATGAAGACGAAGTTGATAATGCTGTTGATGGATTAA
CTAGCATGATGGAACCCTTGATTATGTCTGTGCTAGGCGTACTTATAGGTGGCCTAATTATTGCCATGTATCTGCCAATT
TTCCAGATGGGCCAAGTTGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

67.073

100

0.674
  pilC Acinetobacter baumannii D1279779

66.748

100

0.669
  pilC Pseudomonas stutzeri DSM 10701

67.168

97.794

0.657
  pilC Legionella pneumophila strain ERS1305867

55.138

97.794

0.539
  pilG Neisseria meningitidis 44/76-A

47.015

98.529

0.463
  pilG Neisseria gonorrhoeae MS11

47.015

98.529

0.463
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

42.752

99.755

0.426

Multiple sequence alignment