Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAII | Type | Regulator |
| Locus tag | CR152_RS11130 | Genome accession | NZ_CP024608 |
| Coordinates | 2455285..2455710 (+) | Length | 141 a.a. |
| NCBI ID | WP_307718568.1 | Uniprot ID | - |
| Organism | Massilia violaceinigra strain B2 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2439042..2459763 | 2455285..2455710 | within | 0 |
Gene organization within MGE regions
Location: 2439042..2459763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CR152_RS11040 (CR152_10985) | - | 2439267..2439833 (+) | 567 | WP_099882194.1 | DUF2889 domain-containing protein | - |
| CR152_RS11045 (CR152_10990) | sucC | 2439909..2441081 (+) | 1173 | WP_099874963.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| CR152_RS11050 (CR152_10995) | sucD | 2441107..2441988 (+) | 882 | WP_099874964.1 | succinate--CoA ligase subunit alpha | - |
| CR152_RS11055 (CR152_11000) | - | 2442077..2442670 (+) | 594 | WP_099874965.1 | FHA domain-containing protein | - |
| CR152_RS34110 (CR152_11005) | - | 2442884..2443327 (+) | 444 | WP_099874966.1 | pilin | - |
| CR152_RS11065 (CR152_11010) | - | 2443672..2445081 (+) | 1410 | WP_099874967.1 | IS66 family transposase | - |
| CR152_RS11070 (CR152_11015) | - | 2445171..2445377 (+) | 207 | WP_208640110.1 | hypothetical protein | - |
| CR152_RS11075 (CR152_11020) | - | 2445423..2446511 (+) | 1089 | WP_099882196.1 | IS630 family transposase | - |
| CR152_RS34995 (CR152_11025) | - | 2446549..2446695 (+) | 147 | WP_370663813.1 | hypothetical protein | - |
| CR152_RS11085 (CR152_11030) | pilA/pilAII | 2447032..2447457 (+) | 426 | WP_307718567.1 | pilin | Regulator |
| CR152_RS11090 (CR152_11035) | - | 2447655..2448287 (+) | 633 | Protein_2179 | IS5 family transposase | - |
| CR152_RS11095 (CR152_11040) | - | 2448434..2448649 (+) | 216 | WP_370663873.1 | hypothetical protein | - |
| CR152_RS11105 (CR152_11050) | - | 2450220..2451737 (+) | 1518 | Protein_2182 | IS1634 family transposase | - |
| CR152_RS11110 (CR152_11055) | - | 2451801..2452172 (+) | 372 | Protein_2183 | transposase | - |
| CR152_RS11115 (CR152_11060) | - | 2452340..2453860 (-) | 1521 | WP_099874335.1 | IS66 family transposase | - |
| CR152_RS11120 (CR152_11065) | tnpB | 2453916..2454287 (-) | 372 | WP_208640063.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CR152_RS11125 (CR152_11070) | - | 2454257..2454550 (-) | 294 | WP_099874336.1 | hypothetical protein | - |
| CR152_RS11130 (CR152_11075) | pilA/pilAII | 2455285..2455710 (+) | 426 | WP_307718568.1 | pilin | Regulator |
| CR152_RS11135 (CR152_11080) | pilA/pilAII | 2456580..2457005 (+) | 426 | WP_307718569.1 | pilin | Regulator |
| CR152_RS11140 (CR152_11085) | istB | 2457587..2458372 (-) | 786 | WP_099874971.1 | IS21-like element helper ATPase IstB | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14418.06 Da Isoelectric Point: 9.2565
>NTDB_id=254201 CR152_RS11130 WP_307718568.1 2455285..2455710(+) (pilA/pilAII) [Massilia violaceinigra strain B2]
MKSMKMMKKAQAGFTLIELMIVVAIIGILAAVALPAYQDYVAKSQVAASLAEITPGKVQVETKLAEGTAVAAPTDIGIAA
VTKRCSAVAAAVAVTGAGSIECTMIGNSDVTGKTIKWARVATGAWACTSSADPKFVPKECK
MKSMKMMKKAQAGFTLIELMIVVAIIGILAAVALPAYQDYVAKSQVAASLAEITPGKVQVETKLAEGTAVAAPTDIGIAA
VTKRCSAVAAAVAVTGAGSIECTMIGNSDVTGKTIKWARVATGAWACTSSADPKFVPKECK
Nucleotide
Download Length: 426 bp
>NTDB_id=254201 CR152_RS11130 WP_307718568.1 2455285..2455710(+) (pilA/pilAII) [Massilia violaceinigra strain B2]
ATGAAATCGATGAAAATGATGAAAAAAGCACAAGCCGGTTTTACCCTGATCGAACTGATGATCGTTGTTGCAATTATCGG
TATCTTGGCTGCTGTTGCACTGCCAGCGTACCAAGACTATGTTGCCAAGTCGCAAGTTGCCGCTTCCCTGGCTGAAATCA
CCCCAGGTAAAGTCCAAGTAGAAACCAAACTGGCTGAAGGCACTGCTGTTGCCGCTCCTACCGACATCGGCATCGCCGCC
GTCACCAAGCGTTGCTCCGCAGTCGCCGCAGCGGTTGCTGTGACCGGCGCTGGTAGCATCGAGTGCACGATGATCGGCAA
TTCCGACGTTACGGGCAAAACCATCAAGTGGGCCCGCGTTGCTACCGGCGCATGGGCATGCACCTCGAGCGCTGATCCGA
AATTCGTACCAAAAGAATGCAAATAA
ATGAAATCGATGAAAATGATGAAAAAAGCACAAGCCGGTTTTACCCTGATCGAACTGATGATCGTTGTTGCAATTATCGG
TATCTTGGCTGCTGTTGCACTGCCAGCGTACCAAGACTATGTTGCCAAGTCGCAAGTTGCCGCTTCCCTGGCTGAAATCA
CCCCAGGTAAAGTCCAAGTAGAAACCAAACTGGCTGAAGGCACTGCTGTTGCCGCTCCTACCGACATCGGCATCGCCGCC
GTCACCAAGCGTTGCTCCGCAGTCGCCGCAGCGGTTGCTGTGACCGGCGCTGGTAGCATCGAGTGCACGATGATCGGCAA
TTCCGACGTTACGGGCAAAACCATCAAGTGGGCCCGCGTTGCTACCGGCGCATGGGCATGCACCTCGAGCGCTGATCCGA
AATTCGTACCAAAAGAATGCAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
48.951 |
100 |
0.496 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50 |
97.872 |
0.489 |
| pilA | Pseudomonas aeruginosa PAK |
43.624 |
100 |
0.461 |
| pilA | Acinetobacter baumannii strain A118 |
46.667 |
95.745 |
0.447 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.333 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
41.333 |
100 |
0.44 |
| pilA | Vibrio cholerae C6706 |
41.333 |
100 |
0.44 |
| comP | Acinetobacter baylyi ADP1 |
38.926 |
100 |
0.411 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
35.849 |
100 |
0.404 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
39.706 |
96.454 |
0.383 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
36.986 |
100 |
0.383 |
| pilE | Neisseria gonorrhoeae MS11 |
40.31 |
91.489 |
0.369 |
| pilA2 | Legionella pneumophila str. Paris |
36.957 |
97.872 |
0.362 |