Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | SYNPCC7942_RS08885 | Genome accession | NC_007604 |
| Coordinates | 1816600..1817562 (-) | Length | 320 a.a. |
| NCBI ID | WP_011378168.1 | Uniprot ID | Q31ME3 |
| Organism | Synechococcus elongatus PCC 7942 = FACHB-805 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1811600..1822562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYNPCC7942_RS08865 (Synpcc7942_1742) | - | 1812814..1813833 (+) | 1020 | WP_011378166.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| SYNPCC7942_RS08870 (Synpcc7942_1743) | - | 1814092..1815276 (+) | 1185 | WP_011244658.1 | NAD(P)H-quinone oxidoreductase subunit H | - |
| SYNPCC7942_RS08875 (Synpcc7942_1744) | - | 1815423..1815833 (+) | 411 | WP_011244657.1 | acyl-CoA thioesterase | - |
| SYNPCC7942_RS08880 (Synpcc7942_1745) | - | 1815848..1816393 (-) | 546 | WP_011378167.1 | HPP family protein | - |
| SYNPCC7942_RS08885 (Synpcc7942_1746) | rpoS | 1816600..1817562 (-) | 963 | WP_011378168.1 | circadian expression RNA polymerase sigma factor SigA2 | Regulator |
| SYNPCC7942_RS08890 (Synpcc7942_1747) | - | 1817778..1818962 (-) | 1185 | WP_011244654.1 | aldo/keto reductase | - |
| SYNPCC7942_RS08895 (Synpcc7942_1748) | - | 1818990..1819751 (-) | 762 | WP_011378169.1 | class I SAM-dependent methyltransferase | - |
| SYNPCC7942_RS08900 (Synpcc7942_1749) | - | 1819754..1820146 (-) | 393 | WP_011244652.1 | ferredoxin | - |
| SYNPCC7942_RS08905 (Synpcc7942_1750) | - | 1820146..1820532 (-) | 387 | WP_011378170.1 | DUF1257 domain-containing protein | - |
| SYNPCC7942_RS08910 (Synpcc7942_1751) | - | 1820575..1820778 (-) | 204 | WP_011244650.1 | DUF2997 domain-containing protein | - |
| SYNPCC7942_RS08915 (Synpcc7942_1752) | - | 1821018..1821770 (-) | 753 | WP_011244649.1 | HEAT repeat domain-containing protein | - |
| SYNPCC7942_RS08920 (Synpcc7942_1753) | - | 1821890..1822354 (-) | 465 | WP_011244648.1 | GNAT family N-acetyltransferase | - |
| SYNPCC7942_RS14180 (Synpcc7942_1754) | - | 1822345..1822497 (-) | 153 | WP_011244647.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 320 a.a. Molecular weight: 37124.28 Da Isoelectric Point: 6.8905
>NTDB_id=25152 SYNPCC7942_RS08885 WP_011378168.1 1816600..1817562(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805]
MSTSSAQYSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIE
QGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTI
RLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSRLLAEYAAS
MSTSSAQYSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIE
QGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTI
RLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSRLLAEYAAS
Nucleotide
Download Length: 963 bp
>NTDB_id=25152 SYNPCC7942_RS08885 WP_011378168.1 1816600..1817562(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATGTCTACCTCCTCCGCTCAATACAGTCCTGATTTAGTCCGTGCTTACCTGCAAGAAATTGGCCGGGTGCGGCTGCTGAC
CGCTGAAGAAGAGTTGTGCTTTGGCCGACAGGTTCAGCGCCTGATGATGCTCTTGGATGCTCAAACCGAGCTGCGCGATC
GCTTGGGGCATGAGCCTAGCAAAGAAGAATGGGCTGCTGCTGTTGACCTGAATCTCGAAGATCTCGATCGCCAAATTGAG
CAAGGTCAGCGGGCGAAACGCAAAATGATTGAGGCCAACCTGCGCCTCGTTGTTTCGATCGCCAAGAAATACCAGAAGCG
TCACATGGAATTCTTGGATCTCATCCAAGAAGGCACACTGGGGCTGGAGCGTGGTGTCGAAAAATTCGATCCCTCCAAAG
GCTACAAGTTCTCTACCTATGCCTACTGGTGGATTCGCCAAGCTATTACCCGTGCGATCGCCCAACAATCCCGCACGATT
CGTCTGCCTATTCACATCACTGAAAAGCTGAACAAGCTCAAAAAAACCCAGCGCGAACTCTCGCAGCAATTGGGCCGCAG
TGCCACAGCTTCAGAGCTGGCAGAAGTGCTGGAGCTGCCACTGGAGCAGGTGCGGGAATACATCCAAATGAACCGCCAGC
CAGTATCGCTCGATGTCAAAGTAGGTGACAGCCAAGACACTGAATTGCAGGAACTGCTGGAAGACGAGCAGTCTTCGCCC
TCAGATTACGTGGAACAAGAATCGCTACGCCGCGATCTACGCAATTTAATGGCAGAACTGACCCCCCAGCAACAGGCCGT
GATTGCCCTGCGCTACGGCTTGGATGAAGGTGACAGTCTGTCGTTGGCCAAAGTCGGCGAACGCCTGAATATCAGCCGCG
AACGCGTGCGGAAACTAGAGCGCCAAGCCATGGATCACCTACGTCGCCGCAGTCGTCTTCTGGCGGAATACGCAGCTAGC
TAG
ATGTCTACCTCCTCCGCTCAATACAGTCCTGATTTAGTCCGTGCTTACCTGCAAGAAATTGGCCGGGTGCGGCTGCTGAC
CGCTGAAGAAGAGTTGTGCTTTGGCCGACAGGTTCAGCGCCTGATGATGCTCTTGGATGCTCAAACCGAGCTGCGCGATC
GCTTGGGGCATGAGCCTAGCAAAGAAGAATGGGCTGCTGCTGTTGACCTGAATCTCGAAGATCTCGATCGCCAAATTGAG
CAAGGTCAGCGGGCGAAACGCAAAATGATTGAGGCCAACCTGCGCCTCGTTGTTTCGATCGCCAAGAAATACCAGAAGCG
TCACATGGAATTCTTGGATCTCATCCAAGAAGGCACACTGGGGCTGGAGCGTGGTGTCGAAAAATTCGATCCCTCCAAAG
GCTACAAGTTCTCTACCTATGCCTACTGGTGGATTCGCCAAGCTATTACCCGTGCGATCGCCCAACAATCCCGCACGATT
CGTCTGCCTATTCACATCACTGAAAAGCTGAACAAGCTCAAAAAAACCCAGCGCGAACTCTCGCAGCAATTGGGCCGCAG
TGCCACAGCTTCAGAGCTGGCAGAAGTGCTGGAGCTGCCACTGGAGCAGGTGCGGGAATACATCCAAATGAACCGCCAGC
CAGTATCGCTCGATGTCAAAGTAGGTGACAGCCAAGACACTGAATTGCAGGAACTGCTGGAAGACGAGCAGTCTTCGCCC
TCAGATTACGTGGAACAAGAATCGCTACGCCGCGATCTACGCAATTTAATGGCAGAACTGACCCCCCAGCAACAGGCCGT
GATTGCCCTGCGCTACGGCTTGGATGAAGGTGACAGTCTGTCGTTGGCCAAAGTCGGCGAACGCCTGAATATCAGCCGCG
AACGCGTGCGGAAACTAGAGCGCCAAGCCATGGATCACCTACGTCGCCGCAGTCGTCTTCTGGCGGAATACGCAGCTAGC
TAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.87 |
94.063 |
0.366 |