Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SAB_RS07555 Genome accession   NC_007622
Coordinates   1533587..1534033 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528587..1539033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS07525 (SAB1408c) gcvPA 1529513..1530859 (-) 1347 WP_000019695.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAB_RS07530 (SAB1409c) gcvT 1530879..1531970 (-) 1092 WP_000093341.1 glycine cleavage system aminomethyltransferase GcvT -
  SAB_RS07535 (SAB1410c) - 1532129..1532653 (-) 525 WP_001015120.1 shikimate kinase -
  SAB_RS07540 - 1532643..1532789 (-) 147 WP_078062659.1 hypothetical protein -
  SAB_RS07545 (SAB1411c) comGF 1532886..1533383 (-) 498 WP_052658450.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAB_RS07550 (SAB1412c) comGE 1533301..1533600 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  SAB_RS07555 (SAB1413c) comGD 1533587..1534033 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAB_RS07560 (SAB1414c) comGC 1534011..1534322 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  SAB_RS07565 (SAB1415c) comGB 1534336..1535406 (-) 1071 Protein_1470 competence type IV pilus assembly protein ComGB -
  SAB_RS07570 (SAB1416c) comGA 1535378..1536352 (-) 975 WP_000697229.1 competence type IV pilus ATPase ComGA Machinery gene
  SAB_RS07575 (SAB1417c) - 1536404..1537027 (-) 624 WP_001223007.1 MBL fold metallo-hydrolase -
  SAB_RS07580 (SAB1418c) - 1537024..1537353 (-) 330 WP_001018873.1 MTH1187 family thiamine-binding protein -
  SAB_RS07585 (SAB1419c) - 1537353..1538339 (-) 987 WP_000161315.1 ROK family glucokinase -
  SAB_RS07590 (SAB1420c) - 1538336..1538539 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=25151 SAB_RS07555 WP_001796473.1 1533587..1534033(-) (comGD) [Staphylococcus aureus RF122]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=25151 SAB_RS07555 WP_001796473.1 1533587..1534033(-) (comGD) [Staphylococcus aureus RF122]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAGGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment