Detailed information NTG0025150

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SYNPCC7942_RS07940
• Genome accession: NC_007604
• Coordinates: 1613464..1614396 (-)
• Length: 310 a.a.
• NCBI ID: WP_011378081.1
• Uniprot ID: Q31MY2
• Organism: Synechococcus elongatus PCC 7942 = FACHB-805
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1608464..1619396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYNPCC7942_RS07915 (Synpcc7942_1552)	ilvC	1609373..1610365 (-)	993	WP_039755692.1	ketol-acid reductoisomerase	-
SYNPCC7942_RS07920 (Synpcc7942_1553)	-	1610364..1611257 (+)	894	WP_011242324.1	PHP domain-containing protein	-
SYNPCC7942_RS07925 (Synpcc7942_1554)	clpP	1611260..1611940 (-)	681	WP_265575068.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
SYNPCC7942_RS07930 (Synpcc7942_1555)	psb29	1611984..1612748 (+)	765	WP_039755956.1	photosystem II biogenesis protein Psp29	-
SYNPCC7942_RS07935 (Synpcc7942_1556)	-	1612870..1613448 (+)	579	WP_011378080.1	hypothetical protein	-
SYNPCC7942_RS07940 (Synpcc7942_1557)	rpoS	1613464..1614396 (-)	933	WP_011378081.1	RpoD/SigA family RNA polymerase sigma factor	Regulator
SYNPCC7942_RS07945	-	1614601..1614786 (+)	186	WP_039755693.1	hypothetical protein	-
SYNPCC7942_RS07950 (Synpcc7942_1558)	-	1615204..1616271 (+)	1068	WP_011378082.1	hypothetical protein	-
SYNPCC7942_RS07955 (Synpcc7942_1559)	-	1616284..1616958 (+)	675	WP_011242330.1	acyltransferase	-
SYNPCC7942_RS14170 (Synpcc7942_1560)	-	1617134..1617292 (+)	159	WP_011242331.1	hypothetical protein	-
SYNPCC7942_RS14020	-	1617274..1617576 (+)	303	WP_126147952.1	hypothetical protein	-
SYNPCC7942_RS14025	-	1617974..1618135 (-)	162	WP_155813833.1	hypothetical protein	-
SYNPCC7942_RS07965 (Synpcc7942_1561)	-	1618181..1618876 (-)	696	WP_155813835.1	hypothetical protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35282.51 Da
• Isoelectric Point: 9.6197

>NTDB_id=25150 SYNPCC7942_RS07940 WP_011378081.1 1613464..1614396(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805]
MASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEETSSDRTFTEAETAAIQLGQRAKERMI
KANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLTERL
SQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAM
QREQLDAWLEHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRNLTKRSRIAV

Nucleotide

• Length: 933 bp

>NTDB_id=25150 SYNPCC7942_RS07940 WP_011378081.1 1613464..1614396(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATGGCGAGTGCTTCGGCTCATGCTGTCGCGACGGCTCAGCGACGAACAAGAGATAACGTCAGTTGGTATCTCAGCTCCAT
CGGTCGGATTCCATTGCTCACCGCCGATCAGGAGATCGAGCTGGGGCAGAAAGTGCAGGTGATGATGAACCTGCTGGAAG
AAACTTCTAGCGATCGCACGTTTACTGAGGCCGAAACCGCAGCGATCCAGCTGGGGCAGCGTGCTAAGGAACGGATGATC
AAGGCCAACTTGCGTCTTGTGGTCTCTGTGGCCAAAAAGTACCAAGGTAAGGGTCTTGAGTTTCTTGACCTGATCCAAGA
AGGCGCTCTCGGGCTAGAACGTGCTGTCGAGAAATTTGACCCCTCCAAGGGCTACAAGTTTTCCACCTATGCCTTTTGGT
GGATTCGCCAGAGCATGACAAGGGCGATCGCCTGCCAATCGCGCACTATTCGCCTGCCGGTTCACTTGACTGAACGGCTG
AGCCAAATCCGCAAAGTGACTCGGGAACTGGCGCACGAGCTAGGCCGTTTGCCCTCTCGCCAAGAAATTGCAGAAGCGGT
TCAGTTGCCACTGAATGACCTCGAAACAATTCTGCGTCAGTCGCGCCAATGCACCAGCCTAGATGCTCCAGTCAGTGGTG
AAGATGGCAAGAGTTTCCTGGGTGAGCTGATTGCTGATCCCAACGGCAATGAGCCCATGGACATCATGGAAAATGCCATG
CAGCGCGAGCAGCTTGATGCTTGGCTCGAGCATCTCACGCCCCAAGAGCGCCAGGTGCTCTATCTCCGCTTTGGACTGGG
TGATGGCGAACGTCATACCCTCGCTGAAATCGGCCGGATGATGGAAGTCTCGCGCGAGCGGGTCCGCCAAGTTGAGGTCA
AAGCGCTGCGTAAGCTCCGCAACCTGACGAAGCGATCGCGGATTGCTGTCTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (248-301)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (18-48)

• Sigma-70 region 3 (Sigma70_r3) (158-234)

• Sigma-70 region 2 (Sigma70_r2) (79-148)

3D structure

• AlphaFold DB: Q31MY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.535	97.097	0.384