Detailed information NTG0025149

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: SYNPCC7942_RS07925
• Genome accession: NC_007604
• Coordinates: 1611260..1611940 (-)
• Length: 226 a.a.
• NCBI ID: WP_265575068.1
• Uniprot ID: -
• Organism: Synechococcus elongatus PCC 7942 = FACHB-805
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1606260..1616940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYNPCC7942_RS07905 (Synpcc7942_1550)	-	1606746..1608002 (+)	1257	WP_011378078.1	Y-family DNA polymerase	-
SYNPCC7942_RS07910 (Synpcc7942_1551)	-	1607980..1608816 (+)	837	WP_231621293.1	hypothetical protein	-
SYNPCC7942_RS07915 (Synpcc7942_1552)	ilvC	1609373..1610365 (-)	993	WP_039755692.1	ketol-acid reductoisomerase	-
SYNPCC7942_RS07920 (Synpcc7942_1553)	-	1610364..1611257 (+)	894	WP_011242324.1	PHP domain-containing protein	-
SYNPCC7942_RS07925 (Synpcc7942_1554)	clpP	1611260..1611940 (-)	681	WP_265575068.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
SYNPCC7942_RS07930 (Synpcc7942_1555)	psb29	1611984..1612748 (+)	765	WP_039755956.1	photosystem II biogenesis protein Psp29	-
SYNPCC7942_RS07935 (Synpcc7942_1556)	-	1612870..1613448 (+)	579	WP_011378080.1	hypothetical protein	-
SYNPCC7942_RS07940 (Synpcc7942_1557)	rpoS	1613464..1614396 (-)	933	WP_011378081.1	RpoD/SigA family RNA polymerase sigma factor	Regulator
SYNPCC7942_RS07945	-	1614601..1614786 (+)	186	WP_039755693.1	hypothetical protein	-
SYNPCC7942_RS07950 (Synpcc7942_1558)	-	1615204..1616271 (+)	1068	WP_011378082.1	hypothetical protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 24951.36 Da
• Isoelectric Point: 4.9920

>NTDB_id=25149 SYNPCC7942_RS07925 WP_265575068.1 1611260..1611940(-) (clpP) [Synechococcus elongatus PCC 7942 = FACHB-805]
MARFAKQRPKGTSGYNNEVFTDRAATENLMIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEA
EDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQA
KDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVIDRRALKATA

Nucleotide

• Length: 681 bp

>NTDB_id=25149 SYNPCC7942_RS07925 WP_265575068.1 1611260..1611940(-) (clpP) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATCGCCCGCTTTGCCAAGCAACGACCGAAGGGCACCTCTGGCTACAATAACGAAGTCTTCACCGACCGTGCAGCAACCGA
GAACCTCATGATCCCCATCGTCGTCGAAGAATCTGGACGGGGCGAACGCGCCTTTGATATCTACTCACGTCTGTTGCGGG
AGCGGATTATCTTCTTGGGCGAGCCTGTCACCTCTGATGTCGCCAACCGTATCGTGGCGCAGTTGCTGTTCCTCGAAGCG
GAAGATCCCGAGAAAGATATCTACCTCTACATCAATTCGCCGGGCGGCTCGGTCTATGACGGACTGGGTATCTTCGACAC
AATGAACCACATCCGACCGGATGTCTCGACCGTTTGTGTCGGGCTGGCTGCCAGCATGGGCGCCTTCCTGCTCGCAGCCG
GAGCCAAAGGTAAGCGCACCAGCTTGGCCCACTCGCGGATCATGATTCACCAACCCTTGGGTGGTGCTCAAGGTCAGGCT
AAGGACATCGAAATCCAAGCCAACGAAATCCTCTACATCAAGCAGAACTTGAACGAGGTTTTGGCGGAGCGCACCGGCCA
GCCCCTCAGCCGCATTGAAGATGACACCGATCGCGACTTCTTCATGTCCGCGAGTGAGGCGGTTGAATACGGCCTGATCG
ATCGCGTCATCGATCGCCGCGCCCTCAAAGCCACGGCTTAA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (40-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.021	83.186	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.921	84.513	0.549
clpP	Lactococcus lactis subsp. cremoris KW2	51.02	86.726	0.442
clpP	Streptococcus thermophilus LMG 18311	50.51	86.726	0.438
clpP	Streptococcus thermophilus LMD-9	50.51	86.726	0.438
clpP	Streptococcus pneumoniae D39	50	86.726	0.434
clpP	Streptococcus pneumoniae Rx1	50	86.726	0.434
clpP	Streptococcus pneumoniae R6	50	86.726	0.434
clpP	Streptococcus pneumoniae TIGR4	50	86.726	0.434
clpP	Streptococcus mutans UA159	49.49	86.726	0.429
clpP	Streptococcus pyogenes JRS4	48.98	86.726	0.425
clpP	Streptococcus pyogenes MGAS315	48.98	86.726	0.425
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	48.98	86.726	0.425