Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IS_RS18035 | Genome accession | NC_007508 |
| Coordinates | 3840484..3840912 (-) | Length | 142 a.a. |
| NCBI ID | WP_011348339.1 | Uniprot ID | Q3BQ79 |
| Organism | Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3835484..3845912
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS_RS18025 (XCV3351) | pilR | 3836948..3838402 (+) | 1455 | WP_011348337.1 | sigma-54-dependent transcriptional regulator | Regulator |
| IS_RS18030 (XCV3352) | pilB | 3838617..3840326 (-) | 1710 | WP_039416953.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IS_RS18035 (XCV3353) | pilA | 3840484..3840912 (-) | 429 | WP_011348339.1 | pilin | Machinery gene |
| IS_RS18040 (XCV3354) | pilC | 3841254..3842516 (+) | 1263 | WP_011348340.1 | type II secretion system F family protein | Machinery gene |
| IS_RS18045 (XCV3355) | - | 3842523..3843386 (+) | 864 | WP_008576868.1 | prepilin peptidase | - |
| IS_RS18050 (XCV3356) | coaE | 3843400..3844011 (+) | 612 | WP_011348341.1 | dephospho-CoA kinase | - |
| IS_RS26130 (XCV3357) | - | 3844193..3845233 (+) | 1041 | WP_011348342.1 | RHS repeat domain-containing protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14343.43 Da Isoelectric Point: 9.1206
>NTDB_id=24900 IS_RS18035 WP_011348339.1 3840484..3840912(-) (pilA) [Xanthomonas euvesicatoria pv. vesicatoria str. 85-10]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
Nucleotide
Download Length: 429 bp
>NTDB_id=24900 IS_RS18035 WP_011348339.1 3840484..3840912(-) (pilA) [Xanthomonas euvesicatoria pv. vesicatoria str. 85-10]
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.572 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
54.795 |
100 |
0.563 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.795 |
100 |
0.563 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.894 |
100 |
0.528 |
| comP | Acinetobacter baylyi ADP1 |
47.468 |
100 |
0.528 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.096 |
100 |
0.423 |
| pilA | Acinetobacter baumannii strain A118 |
39.716 |
99.296 |
0.394 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.571 |
98.592 |
0.38 |
| pilA | Vibrio cholerae C6706 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae strain A1552 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
33.766 |
100 |
0.366 |