Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | IS_RS18040 | Genome accession | NC_007508 |
| Coordinates | 3841254..3842516 (+) | Length | 420 a.a. |
| NCBI ID | WP_011348340.1 | Uniprot ID | Q3BQ78 |
| Organism | Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3836254..3847516
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS_RS18025 (XCV3351) | pilR | 3836948..3838402 (+) | 1455 | WP_011348337.1 | sigma-54-dependent transcriptional regulator | Regulator |
| IS_RS18030 (XCV3352) | pilB | 3838617..3840326 (-) | 1710 | WP_039416953.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IS_RS18035 (XCV3353) | pilA | 3840484..3840912 (-) | 429 | WP_011348339.1 | pilin | Machinery gene |
| IS_RS18040 (XCV3354) | pilC | 3841254..3842516 (+) | 1263 | WP_011348340.1 | type II secretion system F family protein | Machinery gene |
| IS_RS18045 (XCV3355) | - | 3842523..3843386 (+) | 864 | WP_008576868.1 | prepilin peptidase | - |
| IS_RS18050 (XCV3356) | coaE | 3843400..3844011 (+) | 612 | WP_011348341.1 | dephospho-CoA kinase | - |
| IS_RS26130 (XCV3357) | - | 3844193..3845233 (+) | 1041 | WP_011348342.1 | RHS repeat domain-containing protein | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 46224.74 Da Isoelectric Point: 10.2689
>NTDB_id=24901 IS_RS18040 WP_011348340.1 3841254..3842516(+) (pilC) [Xanthomonas euvesicatoria pv. vesicatoria str. 85-10]
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
MSVARNAIKKQTADRSTVQQLQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSIVKLKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISRHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMFFVIAGAIVGFVFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1263 bp
>NTDB_id=24901 IS_RS18040 WP_011348340.1 3841254..3842516(+) (pilC) [Xanthomonas euvesicatoria pv. vesicatoria str. 85-10]
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATCGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGTGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGATAGGCTTATATTGAGAGTGCCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGTACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTGAACCTGTTTCC
ACACATGGTTATTCAAATGACTGCGATTGGTGAGGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTTGCTGAATACT
TTGAACAGGAGGTCAATAATGCAGTGGATGCACTTAGCAGTCTGCTCGAGCCCATGATTATGGTCTTCATCGGTGTTGTC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGTCTGTCGCACGCAACGCCATCAAGAAGCAAACTGCGGATCGTAGCACCGTTCAACAGCTACAGCTGTTCCTTTGGGA
AGGAACTGACAAACGCGGGATCAAGATGAAAGGCGAACAGACTGCTCGCAACATGAACATGTTGCGGGCGGAGCTTCGCC
GCCAGGGTATCAATCCATCGATAGTCAAGCTTAAGCCTAAGCCGCTGTTCGGTGCTGCAGGCAAGAAAATCACGCCAAAA
GACATCGCTTTTTTCAGCCGCCAGATGGCGACCATGATGAAATCGGGGGTGCCGATTGTAGGCTCGCTCGAGATCATCGG
TGAGGGTCACAAAAACCCGCGGATGAAAAAGATGGTGGGTCAAGTGAGAACGGATATCGAGGGAGGCTCCTCCCTTTACG
AATCAATCAGCAGACATCCGGTTCAGTTTGACGAGCTCTACCGAAACCTTGTAAGAGCAGGTGAGGGTGCAGGCGTCCTG
GAGACAGTGCTAGATACGGTTGCCACTTACAAAGAAAATATAGAAGCACTAAAGGGCAAGATCAAAAAGGCCCTATTTTA
TCCAGCCATGGTTATTGCAGTCGCCCTGATTGTCAGTGCCATCCTCCTCATCTTTGTCGTCCCTCAATTTGAGGAGGTTT
TTAAAGGTTTTGGTGCCGAGCTACCTGCTTTTACTCAAATGATTGTGGGAGCCTCACGCTTCATGGTGAGCTATTGGTGG
ATTATGTTCTTCGTCATAGCAGGCGCCATCGTCGGATTTGTCTTTGCTTATAAGCGTTCGCCAAGCATGCAGCACACTAT
GGATAGGCTTATATTGAGAGTGCCTGTCATAGGTCAAATCATGCATAACAGTTCGATTGCGCGTTTCGCGCGTACCACCG
CTGTTACCTTCAAAGCCGGCGTCCCACTGGTAGAGGCATTAGGCATTGTTGCGGGCGCCACTGGGAACCGCGTTTACGAA
GATGCTGTACTCCGCATGCGTGACGACGTATCCGTGGGATACCCTGTCAACATGGCGATGAAACAGGTGAACCTGTTTCC
ACACATGGTTATTCAAATGACTGCGATTGGTGAGGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTTGCTGAATACT
TTGAACAGGAGGTCAATAATGCAGTGGATGCACTTAGCAGTCTGCTCGAGCCCATGATTATGGTCTTCATCGGTGTTGTC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
54.408 |
94.524 |
0.514 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.383 |
95 |
0.507 |
| pilC | Acinetobacter baylyi ADP1 |
51.741 |
95.714 |
0.495 |
| pilC | Acinetobacter baumannii D1279779 |
50 |
95.714 |
0.479 |
| pilG | Neisseria gonorrhoeae MS11 |
44.612 |
95 |
0.424 |
| pilG | Neisseria meningitidis 44/76-A |
44.11 |
95 |
0.419 |
| pilC | Vibrio cholerae strain A1552 |
41.5 |
95.238 |
0.395 |
| pilC | Vibrio campbellii strain DS40M4 |
39.409 |
96.667 |
0.381 |