Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   CO687_RS04165 Genome accession   NZ_CP023511
Coordinates   839078..839395 (+) Length   105 a.a.
NCBI ID   WP_045634162.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 834078..844395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS04150 (CO687_04150) - 836704..837063 (+) 360 WP_008810065.1 DUF1033 family protein -
  CO687_RS04155 (CO687_04155) comYA 837176..838114 (+) 939 WP_046164736.1 competence type IV pilus ATPase ComGA Machinery gene
  CO687_RS04160 (CO687_04160) comYB 838047..839081 (+) 1035 WP_061582647.1 competence type IV pilus assembly protein ComGB Machinery gene
  CO687_RS04165 (CO687_04165) comYC 839078..839395 (+) 318 WP_045634162.1 competence type IV pilus major pilin ComGC Machinery gene
  CO687_RS04170 (CO687_04170) comYD 839355..839783 (+) 429 WP_096754961.1 competence type IV pilus minor pilin ComGD Machinery gene
  CO687_RS04175 (CO687_04175) comGE/cglE 839755..840048 (+) 294 WP_096754962.1 competence type IV pilus minor pilin ComGE Machinery gene
  CO687_RS04180 (CO687_04180) comGF/cglF 840032..840469 (+) 438 WP_008810059.1 competence type IV pilus minor pilin ComGF Machinery gene
  CO687_RS04185 (CO687_04185) comGG 840450..840881 (+) 432 WP_172858951.1 competence type IV pilus minor pilin ComGG -
  CO687_RS04190 (CO687_04190) comYH 840912..841865 (+) 954 WP_096754963.1 class I SAM-dependent methyltransferase Machinery gene
  CO687_RS04195 (CO687_04195) - 841915..843105 (+) 1191 WP_048777262.1 acetate kinase -
  CO687_RS04200 (CO687_04200) - 843153..843818 (+) 666 WP_048777261.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11447.31 Da        Isoelectric Point: 9.7153

>NTDB_id=247957 CO687_RS04165 WP_045634162.1 839078..839395(+) (comYC) [Streptococcus gordonii strain FDAARGOS_371]
MNKLKNLRVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVSDTGNAAVVKVVESQAELYELKNTGDQATLSKLVAAGN
ISQKQADSYKAYYGKNNSETQAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=247957 CO687_RS04165 WP_045634162.1 839078..839395(+) (comYC) [Streptococcus gordonii strain FDAARGOS_371]
ATGAACAAATTAAAAAATTTACGCGTAAAAGCCTTTACTTTAGTGGAAATGCTAGTCGTCCTTCTGATCATCAGTGTCCT
TATGCTCTTGTTTGTACCTAATCTAACCAAGCAAAAAGAGGCTGTTTCGGATACTGGAAATGCTGCGGTGGTCAAGGTGG
TTGAAAGCCAGGCTGAGCTCTATGAACTCAAAAATACAGGAGATCAAGCAACCCTCAGCAAATTAGTCGCAGCTGGGAAC
ATCAGTCAAAAGCAAGCAGACTCTTACAAGGCTTATTATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

99.048

100

0.99
  comYC Streptococcus mutans UA140

71.429

100

0.714
  comYC Streptococcus mutans UA159

71.429

100

0.714
  comGC/cglC Streptococcus mitis NCTC 12261

68.571

100

0.686
  comGC/cglC Streptococcus mitis SK321

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae Rx1

66.99

98.095

0.657
  comGC/cglC Streptococcus pneumoniae D39

66.99

98.095

0.657
  comGC/cglC Streptococcus pneumoniae TIGR4

66.99

98.095

0.657
  comGC/cglC Streptococcus pneumoniae R6

66.99

98.095

0.657
  comGC Lactococcus lactis subsp. cremoris KW2

59.794

92.381

0.552
  comYC Streptococcus suis isolate S10

61.798

84.762

0.524

Multiple sequence alignment