Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | CO687_RS04190 | Genome accession | NZ_CP023511 |
| Coordinates | 840912..841865 (+) | Length | 317 a.a. |
| NCBI ID | WP_096754963.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain FDAARGOS_371 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 835912..846865
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO687_RS04150 (CO687_04150) | - | 836704..837063 (+) | 360 | WP_008810065.1 | DUF1033 family protein | - |
| CO687_RS04155 (CO687_04155) | comYA | 837176..838114 (+) | 939 | WP_046164736.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CO687_RS04160 (CO687_04160) | comYB | 838047..839081 (+) | 1035 | WP_061582647.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CO687_RS04165 (CO687_04165) | comYC | 839078..839395 (+) | 318 | WP_045634162.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CO687_RS04170 (CO687_04170) | comYD | 839355..839783 (+) | 429 | WP_096754961.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CO687_RS04175 (CO687_04175) | comGE/cglE | 839755..840048 (+) | 294 | WP_096754962.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| CO687_RS04180 (CO687_04180) | comGF/cglF | 840032..840469 (+) | 438 | WP_008810059.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CO687_RS04185 (CO687_04185) | comGG | 840450..840881 (+) | 432 | WP_172858951.1 | competence type IV pilus minor pilin ComGG | - |
| CO687_RS04190 (CO687_04190) | comYH | 840912..841865 (+) | 954 | WP_096754963.1 | class I SAM-dependent methyltransferase | Machinery gene |
| CO687_RS04195 (CO687_04195) | - | 841915..843105 (+) | 1191 | WP_048777262.1 | acetate kinase | - |
| CO687_RS04200 (CO687_04200) | - | 843153..843818 (+) | 666 | WP_048777261.1 | type II CAAX endopeptidase family protein | - |
| CO687_RS04205 (CO687_04205) | folP | 843896..844861 (+) | 966 | WP_061596807.1 | dihydropteroate synthase | - |
| CO687_RS04210 (CO687_04210) | - | 844866..846197 (+) | 1332 | WP_061596835.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36012.15 Da Isoelectric Point: 4.8739
>NTDB_id=247961 CO687_RS04190 WP_096754963.1 840912..841865(+) (comYH) [Streptococcus gordonii strain FDAARGOS_371]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFVIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKAEPFVYALADLQNHEEITRFRESFQKWRKVSEN
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFVIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKAEPFVYALADLQNHEEITRFRESFQKWRKVSEN
Nucleotide
Download Length: 954 bp
>NTDB_id=247961 CO687_RS04190 WP_096754963.1 840912..841865(+) (comYH) [Streptococcus gordonii strain FDAARGOS_371]
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATTGAGCAAAACGGTATCTATTTGGATGGACAAACGGACTTAGAAATCGTTAAAAAGAATCATC
AGACCTTGAAGAGCCTAAAGCTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAGCCTTTACAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCGTCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGACCTATCCGCCAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGCGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTACCAGGTAGCCAGTCAGACGGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCACCTCTTAACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGTTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGTCTCTCAGGCTAAGACGGTTTTTGTTCTGCAAAAACAAAAAAATATAAAAGCAGAGCCTTTTGTCTATGCATTGGCAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATTGAGCAAAACGGTATCTATTTGGATGGACAAACGGACTTAGAAATCGTTAAAAAGAATCATC
AGACCTTGAAGAGCCTAAAGCTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAGCCTTTACAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCGTCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAAG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGACCTATCCGCCAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGCGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTACCAGGTAGCCAGTCAGACGGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCACCTCTTAACCAGCCCGCAG
AGTGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGTTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGTCTCTCAGGCTAAGACGGTTTTTGTTCTGCAAAAACAAAAAAATATAAAAGCAGAGCCTTTTGTCTATGCATTGGCAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
59.105 |
98.738 |
0.584 |
| comYH | Streptococcus mutans UA140 |
59.105 |
98.738 |
0.584 |