Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   CO687_RS04170 Genome accession   NZ_CP023511
Coordinates   839355..839783 (+) Length   142 a.a.
NCBI ID   WP_096754961.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 834355..844783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS04150 (CO687_04150) - 836704..837063 (+) 360 WP_008810065.1 DUF1033 family protein -
  CO687_RS04155 (CO687_04155) comYA 837176..838114 (+) 939 WP_046164736.1 competence type IV pilus ATPase ComGA Machinery gene
  CO687_RS04160 (CO687_04160) comYB 838047..839081 (+) 1035 WP_061582647.1 competence type IV pilus assembly protein ComGB Machinery gene
  CO687_RS04165 (CO687_04165) comYC 839078..839395 (+) 318 WP_045634162.1 competence type IV pilus major pilin ComGC Machinery gene
  CO687_RS04170 (CO687_04170) comYD 839355..839783 (+) 429 WP_096754961.1 competence type IV pilus minor pilin ComGD Machinery gene
  CO687_RS04175 (CO687_04175) comGE/cglE 839755..840048 (+) 294 WP_096754962.1 competence type IV pilus minor pilin ComGE Machinery gene
  CO687_RS04180 (CO687_04180) comGF/cglF 840032..840469 (+) 438 WP_008810059.1 competence type IV pilus minor pilin ComGF Machinery gene
  CO687_RS04185 (CO687_04185) comGG 840450..840881 (+) 432 WP_172858951.1 competence type IV pilus minor pilin ComGG -
  CO687_RS04190 (CO687_04190) comYH 840912..841865 (+) 954 WP_096754963.1 class I SAM-dependent methyltransferase Machinery gene
  CO687_RS04195 (CO687_04195) - 841915..843105 (+) 1191 WP_048777262.1 acetate kinase -
  CO687_RS04200 (CO687_04200) - 843153..843818 (+) 666 WP_048777261.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16128.71 Da        Isoelectric Point: 10.0448

>NTDB_id=247958 CO687_RS04170 WP_096754961.1 839355..839783(+) (comYD) [Streptococcus gordonii strain FDAARGOS_371]
MVRTIVRLRQLPIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQEKIFFLEFEHFYQESQKLSVSSQRKLVLEISNQ
EISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYIGNGKFKKTTN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=247958 CO687_RS04170 WP_096754961.1 839355..839783(+) (comYD) [Streptococcus gordonii strain FDAARGOS_371]
ATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCCAATTAAGGCCTTTACAGTTTTGGAGAGCCTCTTGGTCCTGATGAT
TAGCAGTTTTATCTTGCTGGCTTTATCAAGCTCTGTTCAAGCTACTTTTGAGCAGATTCAGGAAAAGATCTTCTTTTTAG
AATTTGAGCATTTTTATCAGGAAAGTCAGAAGCTTAGCGTATCTTCTCAGAGAAAGCTGGTGCTAGAAATCTCAAACCAA
GAGATTTCAAACGGCTATGCTCGTCTTCCAATTCCTAAAGGAATCCAAGCACCTGAATCTACACAGATCTATTTTGATAA
GGCTGGAGGTAATTCTTCACTCAGTAAAGTTCAGTTTCAAACCAAGGAAGGACTGGTGACCTATCAACTCTATATTGGAA
ATGGCAAATTTAAGAAAACGACAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

98.592

100

0.986
  comGD/cglD Streptococcus pneumoniae TIGR4

59.843

89.437

0.535
  comGD/cglD Streptococcus mitis SK321

59.843

89.437

0.535
  comGD/cglD Streptococcus pneumoniae Rx1

59.843

89.437

0.535
  comGD/cglD Streptococcus pneumoniae D39

59.843

89.437

0.535
  comGD/cglD Streptococcus pneumoniae R6

59.843

89.437

0.535
  comGD/cglD Streptococcus mitis NCTC 12261

56.716

94.366

0.535
  comYD Streptococcus mutans UA140

50.388

90.845

0.458
  comYD Streptococcus mutans UA159

50.388

90.845

0.458
  comGD Lactococcus lactis subsp. cremoris KW2

37.589

99.296

0.373

Multiple sequence alignment