Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | AVA_RS01885 | Genome accession | NC_007413 |
| Coordinates | 487009..488127 (-) | Length | 372 a.a. |
| NCBI ID | WP_011317259.1 | Uniprot ID | - |
| Organism | Trichormus variabilis ATCC 29413 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 482009..493127
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVA_RS01865 (Ava_0371) | - | 483027..483611 (-) | 585 | WP_011317255.1 | Uma2 family endonuclease | - |
| AVA_RS30255 | - | 483754..483954 (-) | 201 | WP_153228360.1 | hypothetical protein | - |
| AVA_RS01870 (Ava_0372) | bioU | 484012..485016 (+) | 1005 | WP_011317256.1 | (S)-8-amino-7-oxononanoate synthase BioU | - |
| AVA_RS01875 (Ava_0373) | - | 485084..485638 (-) | 555 | WP_011317257.1 | hypothetical protein | - |
| AVA_RS01880 (Ava_0374) | - | 485684..486907 (-) | 1224 | WP_011317258.1 | type II secretion system F family protein | - |
| AVA_RS01885 (Ava_0375) | pilT | 487009..488127 (-) | 1119 | WP_011317259.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AVA_RS01890 (Ava_0376) | pilB/pilB1 | 488175..490187 (-) | 2013 | WP_011317260.1 | GspE/PulE family protein | Machinery gene |
| AVA_RS01895 (Ava_0377) | grpE | 490595..491341 (+) | 747 | WP_011317261.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 40849.24 Da Isoelectric Point: 7.0976
>NTDB_id=24691 AVA_RS01885 WP_011317259.1 487009..488127(-) (pilT) [Trichormus variabilis ATCC 29413]
MEMMIEDLMEQMIEMGGSDMHLSAGLPPYFRISGKLTPIGEEVLTADQCQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDVVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSASQTVD
RIIDVFPHEKQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMVITPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKSGTISFEAAMSKTSKPDEIQRLIGPSAPPANAKPGAVKAH
MEMMIEDLMEQMIEMGGSDMHLSAGLPPYFRISGKLTPIGEEVLTADQCQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDVVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIVLVGEMRDLETISLAISAAETGHLVFGTLHTSSASQTVD
RIIDVFPHEKQTQVRVQLSNSLVAVFSQTLVPKKNPKPGEYGRVMAQEIMVITPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKSGTISFEAAMSKTSKPDEIQRLIGPSAPPANAKPGAVKAH
Nucleotide
Download Length: 1119 bp
>NTDB_id=24691 AVA_RS01885 WP_011317259.1 487009..488127(-) (pilT) [Trichormus variabilis ATCC 29413]
ATGGAAATGATGATTGAAGACTTGATGGAGCAGATGATTGAAATGGGTGGCTCGGATATGCACTTATCCGCAGGTTTGCC
TCCCTATTTCCGCATCAGTGGCAAACTCACACCCATAGGCGAAGAGGTGCTGACCGCCGACCAGTGCCAAAGACTGATTT
TTAGTATGCTCAATAACACCCAACGTAAAACCTTAGAGCAGACTTGGGAGTTAGATTGTTCCTATGGTGTCAAAGGTTTA
GCCCGTTTCCGGGTCAATGTTTATAAAGAGCGTGGTGCTTATGCTGCTTGTCTAAGGGCGCTCAGTTCCAAAATTCCTAA
CTTTGAAAAGTTGGGTTTACCCGATGTTGTGCGGGAAATGTGCGACAAACCTAGAGGGTTAATTCTCGTCACAGGGCCGA
CAGGTTCCGGTAAAACAACTACTCTGGCGGCAATGATTGACTTAATTAACCGCACGAAGGCAGAGCATATCCTCACAGTA
GAAGACCCAATTGAGTTTGTATACGAACCAATTAAAAGCTTAGTTCACCAAAGACAGTTAGGCGAAGATACCAAAAGTTT
TGCAAACGCTTTAAAAGCGGCTTTACGGGAAGATCCAGATATTGTTTTGGTAGGGGAAATGCGGGATTTGGAGACAATTT
CTTTGGCGATTTCTGCCGCAGAAACCGGACACTTAGTATTTGGTACGCTGCACACTAGTTCTGCTTCCCAAACTGTTGAC
CGGATTATCGACGTTTTCCCCCACGAAAAACAAACTCAAGTGCGGGTACAGTTATCTAACTCTTTAGTAGCTGTATTTAG
CCAAACATTAGTGCCGAAGAAAAATCCCAAGCCCGGTGAATACGGACGCGTTATGGCACAAGAAATTATGGTTATTACTC
CTGCTATTTCTAACCTGATTCGTGAAGGTAAAACCTCACAAATTTATTCCGCAATTCAGACTGGCGGTAAATTAGGAATG
CAAACATTAGAAAAAGTTTTAGCTGATTTTTATAAATCAGGCACAATTTCCTTTGAAGCAGCAATGTCTAAGACCTCAAA
ACCAGATGAAATTCAACGCCTTATAGGTCCCTCGGCTCCACCGGCAAATGCTAAACCTGGAGCCGTCAAAGCACACTAA
ATGGAAATGATGATTGAAGACTTGATGGAGCAGATGATTGAAATGGGTGGCTCGGATATGCACTTATCCGCAGGTTTGCC
TCCCTATTTCCGCATCAGTGGCAAACTCACACCCATAGGCGAAGAGGTGCTGACCGCCGACCAGTGCCAAAGACTGATTT
TTAGTATGCTCAATAACACCCAACGTAAAACCTTAGAGCAGACTTGGGAGTTAGATTGTTCCTATGGTGTCAAAGGTTTA
GCCCGTTTCCGGGTCAATGTTTATAAAGAGCGTGGTGCTTATGCTGCTTGTCTAAGGGCGCTCAGTTCCAAAATTCCTAA
CTTTGAAAAGTTGGGTTTACCCGATGTTGTGCGGGAAATGTGCGACAAACCTAGAGGGTTAATTCTCGTCACAGGGCCGA
CAGGTTCCGGTAAAACAACTACTCTGGCGGCAATGATTGACTTAATTAACCGCACGAAGGCAGAGCATATCCTCACAGTA
GAAGACCCAATTGAGTTTGTATACGAACCAATTAAAAGCTTAGTTCACCAAAGACAGTTAGGCGAAGATACCAAAAGTTT
TGCAAACGCTTTAAAAGCGGCTTTACGGGAAGATCCAGATATTGTTTTGGTAGGGGAAATGCGGGATTTGGAGACAATTT
CTTTGGCGATTTCTGCCGCAGAAACCGGACACTTAGTATTTGGTACGCTGCACACTAGTTCTGCTTCCCAAACTGTTGAC
CGGATTATCGACGTTTTCCCCCACGAAAAACAAACTCAAGTGCGGGTACAGTTATCTAACTCTTTAGTAGCTGTATTTAG
CCAAACATTAGTGCCGAAGAAAAATCCCAAGCCCGGTGAATACGGACGCGTTATGGCACAAGAAATTATGGTTATTACTC
CTGCTATTTCTAACCTGATTCGTGAAGGTAAAACCTCACAAATTTATTCCGCAATTCAGACTGGCGGTAAATTAGGAATG
CAAACATTAGAAAAAGTTTTAGCTGATTTTTATAAATCAGGCACAATTTCCTTTGAAGCAGCAATGTCTAAGACCTCAAA
ACCAGATGAAATTCAACGCCTTATAGGTCCCTCGGCTCCACCGGCAAATGCTAAACCTGGAGCCGTCAAAGCACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
54.467 |
93.28 |
0.508 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.582 |
93.817 |
0.503 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.738 |
93.28 |
0.492 |
| pilT | Legionella pneumophila strain Lp02 |
52.738 |
93.28 |
0.492 |
| pilT | Acinetobacter baylyi ADP1 |
52.45 |
93.28 |
0.489 |
| pilT | Acinetobacter baumannii D1279779 |
51.585 |
93.28 |
0.481 |
| pilT | Acinetobacter baumannii strain A118 |
51.585 |
93.28 |
0.481 |
| pilT | Acinetobacter nosocomialis M2 |
51.585 |
93.28 |
0.481 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.312 |
100 |
0.473 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.123 |
91.935 |
0.452 |
| pilT | Vibrio cholerae strain A1552 |
49.123 |
91.935 |
0.452 |
| pilT | Neisseria gonorrhoeae MS11 |
47.851 |
93.817 |
0.449 |
| pilT | Neisseria meningitidis 8013 |
47.564 |
93.817 |
0.446 |