Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   XcvCFBP7111P_RS07070 Genome accession   NZ_CP022263
Coordinates   1562882..1563310 (+) Length   142 a.a.
NCBI ID   WP_089111876.1    Uniprot ID   A0AB33CD58
Organism   Xanthomonas citri pv. vignicola strain CFBP7111     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557882..1568310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcvCFBP7111P_RS26180 - 1558942..1559601 (-) 660 WP_157768089.1 hypothetical protein -
  XcvCFBP7111P_RS07055 (XcvCFBP7111P_07055) coaE 1559782..1560393 (-) 612 WP_089111875.1 dephospho-CoA kinase -
  XcvCFBP7111P_RS07060 (XcvCFBP7111P_07060) - 1560407..1561270 (-) 864 WP_003491180.1 A24 family peptidase -
  XcvCFBP7111P_RS07065 (XcvCFBP7111P_07065) pilC 1561277..1562536 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  XcvCFBP7111P_RS07070 (XcvCFBP7111P_07070) comP 1562882..1563310 (+) 429 WP_089111876.1 pilin Machinery gene
  XcvCFBP7111P_RS27315 (XcvCFBP7111P_07075) pilA2 1563408..1563821 (+) 414 WP_089111877.1 pilin Machinery gene
  XcvCFBP7111P_RS07080 (XcvCFBP7111P_07080) pilB 1563863..1565599 (+) 1737 WP_089111878.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XcvCFBP7111P_RS26925 - 1565654..1566133 (-) 480 WP_244170772.1 hypothetical protein -
  XcvCFBP7111P_RS07085 (XcvCFBP7111P_07085) - 1566049..1567444 (-) 1396 Protein_1321 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14523.68 Da        Isoelectric Point: 8.4798

>NTDB_id=237732 XcvCFBP7111P_RS07070 WP_089111876.1 1562882..1563310(+) (comP) [Xanthomonas citri pv. vignicola strain CFBP7111]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPAVGAPNSAVGTTWTCTGSGSQSKYYPAECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=237732 XcvCFBP7111P_RS07070 WP_089111876.1 1562882..1563310(+) (comP) [Xanthomonas citri pv. vignicola strain CFBP7111]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCTGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGCACCGTTTT
GACCTATGCTCCCGCAGTGGGCGCTCCTAACTCGGCGGTTGGTACCACTTGGACCTGCACTGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

52.941

100

0.57
  pilA2 Legionella pneumophila str. Paris

54.61

99.296

0.542
  pilA2 Legionella pneumophila strain ERS1305867

53.901

99.296

0.535
  pilA Ralstonia pseudosolanacearum GMI1000

40.606

100

0.472
  pilA Pseudomonas aeruginosa PAK

36.943

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.86

100

0.401
  pilA/pilA1 Eikenella corrodens VA1

37.748

100

0.401
  pilA/pilAII Pseudomonas stutzeri DSM 10701

38.889

100

0.394
  pilE Neisseria gonorrhoeae strain FA1090

34.81

100

0.387
  pilA Haemophilus influenzae 86-028NP

38.971

95.775

0.373
  pilA Vibrio parahaemolyticus RIMD 2210633

40.31

90.845

0.366

Multiple sequence alignment