Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   XcvCFBP7111P_RS07080 Genome accession   NZ_CP022263
Coordinates   1563863..1565599 (+) Length   578 a.a.
NCBI ID   WP_089111878.1    Uniprot ID   A0AB33CA35
Organism   Xanthomonas citri pv. vignicola strain CFBP7111     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558863..1570599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XcvCFBP7111P_RS26180 - 1558942..1559601 (-) 660 WP_157768089.1 hypothetical protein -
  XcvCFBP7111P_RS07055 (XcvCFBP7111P_07055) coaE 1559782..1560393 (-) 612 WP_089111875.1 dephospho-CoA kinase -
  XcvCFBP7111P_RS07060 (XcvCFBP7111P_07060) - 1560407..1561270 (-) 864 WP_003491180.1 A24 family peptidase -
  XcvCFBP7111P_RS07065 (XcvCFBP7111P_07065) pilC 1561277..1562536 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  XcvCFBP7111P_RS07070 (XcvCFBP7111P_07070) comP 1562882..1563310 (+) 429 WP_089111876.1 pilin Machinery gene
  XcvCFBP7111P_RS27315 (XcvCFBP7111P_07075) pilA2 1563408..1563821 (+) 414 WP_089111877.1 pilin Machinery gene
  XcvCFBP7111P_RS07080 (XcvCFBP7111P_07080) pilB 1563863..1565599 (+) 1737 WP_089111878.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XcvCFBP7111P_RS26925 - 1565654..1566133 (-) 480 WP_244170772.1 hypothetical protein -
  XcvCFBP7111P_RS07085 (XcvCFBP7111P_07085) - 1566049..1567444 (-) 1396 Protein_1321 sigma-54 dependent transcriptional regulator -
  XcvCFBP7111P_RS07090 (XcvCFBP7111P_07090) - 1567775..1569388 (-) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62670.79 Da        Isoelectric Point: 5.7586

>NTDB_id=237733 XcvCFBP7111P_RS07080 WP_089111878.1 1563863..1565599(+) (pilB) [Xanthomonas citri pv. vignicola strain CFBP7111]
MNVAIGSNLVGITGIARRLVQDGALDEVSARAAMDHATQAKVPLPQWFAEKKLVTAAQLAAANAVEFGMPLMDVSAFDAN
QNAVKLVSEELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEAILVDEDQIRRTLEQWQASNASLGSSLG
NDDEEMGDLDVSAGDEDMAAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAP
VKLNQRIAARLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEADQQK
LFLEAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDP
DIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRKSTLP
DNALLAEGFTPAQLAAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQAIGIRDLRQSALM
KAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=237733 XcvCFBP7111P_RS07080 WP_089111878.1 1563863..1565599(+) (pilB) [Xanthomonas citri pv. vignicola strain CFBP7111]
ATGAACGTTGCAATCGGCTCAAATCTAGTTGGAATTACTGGTATTGCGCGGCGCCTTGTTCAGGATGGTGCGCTTGATGA
GGTGAGCGCGCGTGCGGCAATGGATCACGCAACCCAGGCCAAAGTTCCTTTGCCGCAATGGTTCGCCGAAAAGAAGCTTG
TAACAGCCGCACAGCTCGCGGCCGCCAACGCAGTCGAGTTTGGCATGCCTTTGATGGATGTATCGGCATTCGACGCCAAC
CAGAACGCAGTCAAGCTGGTCAGTGAGGAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTT
GTTCGTGGGGGTGAGCAACCCGACCCAGACCCGTGCGCTGGATGACATCAAGTTCCATACGAACCTGGTGGTCGAGGCCA
TTCTTGTCGACGAGGATCAGATCCGCCGGACGCTCGAACAGTGGCAGGCCAGCAACGCGTCGTTGGGTTCGTCGCTTGGC
AACGACGACGAGGAAATGGGGGATCTGGACGTTTCGGCTGGCGACGAGGACATGGCCGCCGGCGGGGATTCCGGGGTCGA
TGCCAAGGGCGACGACACGCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCCGGCGGGGAGCGTCGGACA
TCCATTTCGAGCCGTATGAAGACGACTACCGGGTGCGCTTGCGCATCGATGGCCTGTTGAAGAATGTGGCCAAGGCGCCG
GTGAAGCTGAACCAGCGCATCGCGGCGCGCTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTGCCGCAGGA
CGGGCGCATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACCCTGTTCGGTGAAA
AAGTGGTGCTGCGTATCCTGGACGGCAGTGCGGCCAAGCTGGGCATCGACAAGCTGGGCTATGAGGCAGACCAGCAGAAG
TTGTTCCTGGAGGCGATCCACAAGCCCTATGGAATGGTGTTGGTGACCGGGCCGACTGGTTCGGGCAAGACGGTGTCGTT
GTATACGGCGCTGGGAATTCTCAACGACGAGACGCGCAATATCTCCACCGCGGAGGACCCGGTCGAAATCCGCTTGCCTG
GCGTCAATCAGGTACAGCAGAACAACAAGCGTGGCATGACCTTCGCGGCAGCCTTGCGCTCGTTCCTGCGACAGGACCCG
GACATCATCATGGTCGGCGAAATCCGTGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACGGGTCACATGGT
GCTGTCGACGTTGCACACCAACGATGCGCCGCAGACTATCGCCCGTTTGATGAACATGGGCATTGCGCCCTACAACATCA
CCTCGTCGGTGACCCTTGTCATTGCGCAGCGTCTGGCGCGGCGGTTGTGCAACAACTGCAAGCGCAAGTCGACGCTGCCT
GACAACGCATTGCTGGCCGAAGGGTTCACGCCTGCACAGCTTGCCGCCGGGATCGAGCTGTATGAGGCGGTCGGTTGCGA
CGAGTGCACCGAAGGCTACAAGGGGCGTACCGGTATCTACCAGGTGATGCCGATGACCGACGAAATCGGCGCGATCGTGC
TGGAGGGCGGCAACGCGATGCAGATCGCCGAGGCCGCGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATG
AAGGCTGCGCACGGGGTGACCAGCCTGGCGGAGATCAATCGAGTGACGAAGGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(201-468)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.986

98.27

0.55
  pilB Acinetobacter baylyi ADP1

55.106

98.27

0.542
  pilB Legionella pneumophila strain ERS1305867

51.557

100

0.516
  pilB Vibrio cholerae strain A1552

48.789

100

0.488
  pilF Neisseria gonorrhoeae MS11

48.768

98.27

0.479
  pilB Vibrio parahaemolyticus RIMD 2210633

45.922

97.578

0.448
  pilB Vibrio campbellii strain DS40M4

44.87

99.481

0.446

Multiple sequence alignment