Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I3Q_RS19510 Genome accession   NZ_CP028112
Coordinates   3548046..3548561 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli O103 str. RM8385     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3543046..3553561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3Q_RS19485 (I3Q_19475) ygaZ 3543445..3544182 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  I3Q_RS19490 (I3Q_19480) ygaH 3544172..3544507 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  I3Q_RS19495 (I3Q_19485) emrR 3544598..3545128 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  I3Q_RS19500 (I3Q_19490) emrA 3545255..3546427 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  I3Q_RS19505 (I3Q_19495) emrB 3546444..3547982 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  I3Q_RS19510 (I3Q_19500) luxS 3548046..3548561 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  I3Q_RS19515 (I3Q_19505) gshA 3548711..3550267 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  I3Q_RS19520 (I3Q_19510) yqaA 3550340..3550768 (-) 429 WP_001287457.1 YqaA family protein -
  I3Q_RS19525 (I3Q_19515) yqaB 3550765..3551331 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I3Q_RS19550 (I3Q_19540) csrA 3552516..3552701 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=237744 I3Q_RS19510 WP_001130207.1 3548046..3548561(-) (luxS) [Escherichia coli O103 str. RM8385]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=237744 I3Q_RS19510 WP_001130207.1 3548046..3548561(-) (luxS) [Escherichia coli O103 str. RM8385]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment