Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | CCO03_RS15585 | Genome accession | NZ_CP021455 |
| Coordinates | 3656262..3657398 (+) | Length | 378 a.a. |
| NCBI ID | WP_087282524.1 | Uniprot ID | A0A1Y0EQH8 |
| Organism | Comamonas serinivorans strain DSM 26136 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3651262..3662398
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO03_RS15565 (CCO03_15565) | - | 3652019..3652864 (+) | 846 | WP_087282514.1 | NYN domain-containing protein | - |
| CCO03_RS15570 (CCO03_15570) | htpX | 3653202..3654083 (+) | 882 | WP_087282516.1 | protease HtpX | - |
| CCO03_RS15575 (CCO03_15575) | - | 3654272..3654973 (+) | 702 | WP_087282519.1 | MarC family protein | - |
| CCO03_RS15580 (CCO03_15580) | pilT | 3655142..3656185 (+) | 1044 | WP_087282521.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| CCO03_RS15585 (CCO03_15585) | pilU | 3656262..3657398 (+) | 1137 | WP_087282524.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| CCO03_RS15590 (CCO03_15590) | - | 3657814..3659595 (-) | 1782 | WP_087282526.1 | acyclic terpene utilization AtuA family protein | - |
| CCO03_RS15595 (CCO03_15595) | - | 3659688..3660455 (-) | 768 | WP_087282528.1 | enoyl-CoA hydratase/isomerase family protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 41892.38 Da Isoelectric Point: 6.9725
>NTDB_id=230870 CCO03_RS15585 WP_087282524.1 3656262..3657398(+) (pilU) [Comamonas serinivorans strain DSM 26136]
MERDQASKFINDLLKLMISRKGSDLFITADFPPAIKVDGRINKVSAQPLTAAHTLALVRSVMNDKQGAEFERTKECNFAI
SPAGIGRFRVNAFLQQGKVGMVLRLIPQELPTIDGLGMPQVLKDVAMSKRGLTILVGATGSGKSTTLAAMVDWRNLNSYG
HIVTVEDPVEFVHPHKNCIVTQREVGLDTDSWEAALKNSLRQAPDVILMGEIRDRETMEHAVAFAETGHLCLATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLRALVSQRLLPKQDSKGRTAAVEIMLNSPLIADLIFKGEVGEIKEIMKKSRELG
MQTFDQSLFDLFEANQITFEDALRNADSMNDLRLQIKLHSQRAKSLDLAAGTEHLAIV
MERDQASKFINDLLKLMISRKGSDLFITADFPPAIKVDGRINKVSAQPLTAAHTLALVRSVMNDKQGAEFERTKECNFAI
SPAGIGRFRVNAFLQQGKVGMVLRLIPQELPTIDGLGMPQVLKDVAMSKRGLTILVGATGSGKSTTLAAMVDWRNLNSYG
HIVTVEDPVEFVHPHKNCIVTQREVGLDTDSWEAALKNSLRQAPDVILMGEIRDRETMEHAVAFAETGHLCLATLHANSA
NQALDRIINFFPEERRAQLLMDLSLNLRALVSQRLLPKQDSKGRTAAVEIMLNSPLIADLIFKGEVGEIKEIMKKSRELG
MQTFDQSLFDLFEANQITFEDALRNADSMNDLRLQIKLHSQRAKSLDLAAGTEHLAIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=230870 CCO03_RS15585 WP_087282524.1 3656262..3657398(+) (pilU) [Comamonas serinivorans strain DSM 26136]
ATGGAACGCGATCAGGCTTCAAAGTTCATCAACGACCTGCTCAAGCTGATGATCAGCCGCAAGGGCAGCGACCTGTTCAT
CACGGCCGACTTTCCGCCGGCCATCAAGGTCGACGGACGGATCAACAAGGTGTCGGCCCAGCCGCTGACCGCGGCGCACA
CCCTGGCGCTGGTGCGCTCGGTGATGAACGACAAACAAGGCGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCCATC
TCGCCGGCCGGCATCGGGCGTTTCCGCGTCAACGCCTTCCTGCAGCAGGGCAAGGTGGGCATGGTGCTGCGGTTGATCCC
GCAGGAACTGCCCACCATCGATGGCCTGGGCATGCCGCAGGTGCTCAAGGACGTGGCCATGTCCAAGCGCGGGCTGACCA
TCCTGGTCGGCGCCACGGGCTCAGGCAAATCGACCACGCTGGCAGCCATGGTGGACTGGCGCAACCTCAACTCCTACGGC
CACATCGTCACCGTGGAAGACCCGGTGGAGTTCGTGCACCCGCACAAGAACTGCATCGTGACCCAGCGCGAAGTGGGCCT
GGACACCGATTCGTGGGAAGCCGCCCTCAAGAACAGCCTGCGGCAAGCGCCCGATGTCATCCTGATGGGCGAAATCCGCG
ACCGCGAAACCATGGAGCACGCGGTGGCCTTTGCCGAAACCGGTCACCTGTGCCTGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTGGACCGCATCATCAACTTCTTCCCCGAAGAGCGGCGCGCTCAGCTGCTGATGGACCTGTCGCTGAACCT
GCGCGCCCTGGTGTCGCAACGCCTGCTGCCCAAGCAGGACAGCAAGGGGCGCACTGCCGCAGTCGAAATCATGCTGAACT
CGCCGCTCATCGCCGACTTGATCTTCAAGGGCGAAGTCGGCGAGATCAAAGAGATCATGAAGAAAAGCCGCGAGCTGGGC
ATGCAGACCTTCGACCAGTCGCTGTTCGACCTGTTCGAGGCCAACCAGATCACCTTCGAAGACGCGCTGCGCAATGCCGA
CTCGATGAACGACCTGCGCCTGCAGATCAAGCTGCACAGCCAGCGCGCCAAGTCGCTGGACCTGGCCGCCGGCACCGAGC
ACCTGGCCATCGTCTGA
ATGGAACGCGATCAGGCTTCAAAGTTCATCAACGACCTGCTCAAGCTGATGATCAGCCGCAAGGGCAGCGACCTGTTCAT
CACGGCCGACTTTCCGCCGGCCATCAAGGTCGACGGACGGATCAACAAGGTGTCGGCCCAGCCGCTGACCGCGGCGCACA
CCCTGGCGCTGGTGCGCTCGGTGATGAACGACAAACAAGGCGCCGAGTTCGAGCGCACCAAGGAGTGCAACTTCGCCATC
TCGCCGGCCGGCATCGGGCGTTTCCGCGTCAACGCCTTCCTGCAGCAGGGCAAGGTGGGCATGGTGCTGCGGTTGATCCC
GCAGGAACTGCCCACCATCGATGGCCTGGGCATGCCGCAGGTGCTCAAGGACGTGGCCATGTCCAAGCGCGGGCTGACCA
TCCTGGTCGGCGCCACGGGCTCAGGCAAATCGACCACGCTGGCAGCCATGGTGGACTGGCGCAACCTCAACTCCTACGGC
CACATCGTCACCGTGGAAGACCCGGTGGAGTTCGTGCACCCGCACAAGAACTGCATCGTGACCCAGCGCGAAGTGGGCCT
GGACACCGATTCGTGGGAAGCCGCCCTCAAGAACAGCCTGCGGCAAGCGCCCGATGTCATCCTGATGGGCGAAATCCGCG
ACCGCGAAACCATGGAGCACGCGGTGGCCTTTGCCGAAACCGGTCACCTGTGCCTGGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGCTGGACCGCATCATCAACTTCTTCCCCGAAGAGCGGCGCGCTCAGCTGCTGATGGACCTGTCGCTGAACCT
GCGCGCCCTGGTGTCGCAACGCCTGCTGCCCAAGCAGGACAGCAAGGGGCGCACTGCCGCAGTCGAAATCATGCTGAACT
CGCCGCTCATCGCCGACTTGATCTTCAAGGGCGAAGTCGGCGAGATCAAAGAGATCATGAAGAAAAGCCGCGAGCTGGGC
ATGCAGACCTTCGACCAGTCGCTGTTCGACCTGTTCGAGGCCAACCAGATCACCTTCGAAGACGCGCTGCGCAATGCCGA
CTCGATGAACGACCTGCGCCTGCAGATCAAGCTGCACAGCCAGCGCGCCAAGTCGCTGGACCTGGCCGCCGGCACCGAGC
ACCTGGCCATCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
63.61 |
92.328 |
0.587 |
| pilU | Acinetobacter baylyi ADP1 |
56.983 |
94.709 |
0.54 |
| pilU | Vibrio cholerae strain A1552 |
55.747 |
92.063 |
0.513 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.994 |
89.153 |
0.41 |
| pilT | Pseudomonas aeruginosa PAK |
43.917 |
89.153 |
0.392 |
| pilT | Legionella pneumophila strain Lp02 |
44.681 |
87.037 |
0.389 |
| pilT | Legionella pneumophila strain ERS1305867 |
44.681 |
87.037 |
0.389 |
| pilT | Acinetobacter nosocomialis M2 |
43.243 |
88.095 |
0.381 |
| pilT | Pseudomonas stutzeri DSM 10701 |
42.433 |
89.153 |
0.378 |
| pilT | Acinetobacter baumannii D1279779 |
44.201 |
84.392 |
0.373 |
| pilT | Acinetobacter baumannii strain A118 |
44.201 |
84.392 |
0.373 |
| pilT | Acinetobacter baylyi ADP1 |
42.342 |
88.095 |
0.373 |