Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | SJ2017_RS02095 | Genome accession | NZ_CP020472 |
| Coordinates | 466303..466716 (-) | Length | 137 a.a. |
| NCBI ID | WP_174567601.1 | Uniprot ID | - |
| Organism | Shewanella japonica strain KCTC 22435 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 461303..471716
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SJ2017_RS02080 (SJ2017_0405) | pilC | 461488..462750 (-) | 1263 | WP_065109604.1 | type II secretion system F family protein | Machinery gene |
| SJ2017_RS02085 (SJ2017_0406) | pilB | 462811..464517 (-) | 1707 | WP_080914719.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SJ2017_RS02090 (SJ2017_0407) | - | 464844..466208 (+) | 1365 | WP_080914720.1 | O-antigen ligase family protein | - |
| SJ2017_RS02095 (SJ2017_0408) | pilA/pilAI | 466303..466716 (-) | 414 | WP_174567601.1 | pilin | Machinery gene |
| SJ2017_RS02100 (SJ2017_0409) | nadC | 467900..468778 (-) | 879 | WP_065109608.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| SJ2017_RS02105 (SJ2017_0410) | ampD | 469016..469576 (+) | 561 | WP_055022946.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| SJ2017_RS02110 (SJ2017_0411) | ampE | 469775..470626 (+) | 852 | WP_080914721.1 | beta-lactamase regulator AmpE | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 14121.15 Da Isoelectric Point: 8.8121
>NTDB_id=223557 SJ2017_RS02095 WP_174567601.1 466303..466716(-) (pilA/pilAI) [Shewanella japonica strain KCTC 22435]
MKNAKGFTLIELMIVVAIIGILAAIALPAYQDYTVKSQVGSAYSELSSLKSQFEVIKNEGKTPSLTATDAGYIGQTAGGG
RYCALTVTGTSIACSIKNSNADKANGKTLTLNRTTEGVWSCATGGGLDAKFKPGSCS
MKNAKGFTLIELMIVVAIIGILAAIALPAYQDYTVKSQVGSAYSELSSLKSQFEVIKNEGKTPSLTATDAGYIGQTAGGG
RYCALTVTGTSIACSIKNSNADKANGKTLTLNRTTEGVWSCATGGGLDAKFKPGSCS
Nucleotide
Download Length: 414 bp
>NTDB_id=223557 SJ2017_RS02095 WP_174567601.1 466303..466716(-) (pilA/pilAI) [Shewanella japonica strain KCTC 22435]
ATGAAAAACGCTAAGGGTTTTACTCTTATTGAATTAATGATCGTAGTAGCGATCATCGGTATTCTTGCAGCAATCGCATT
GCCTGCTTACCAAGATTACACTGTTAAGTCACAAGTAGGTTCTGCTTATTCTGAACTTAGCTCTTTAAAGTCACAATTTG
AAGTTATTAAGAATGAAGGTAAAACACCTTCATTGACTGCTACTGACGCTGGTTATATAGGTCAGACTGCTGGCGGCGGT
CGTTATTGTGCTCTTACAGTTACAGGTACAAGCATTGCTTGCTCAATTAAGAATTCAAATGCAGATAAAGCAAATGGTAA
AACACTAACATTGAACCGTACAACTGAAGGTGTTTGGTCATGTGCTACAGGCGGTGGTTTAGACGCTAAATTTAAGCCTG
GAAGCTGTAGCTAA
ATGAAAAACGCTAAGGGTTTTACTCTTATTGAATTAATGATCGTAGTAGCGATCATCGGTATTCTTGCAGCAATCGCATT
GCCTGCTTACCAAGATTACACTGTTAAGTCACAAGTAGGTTCTGCTTATTCTGAACTTAGCTCTTTAAAGTCACAATTTG
AAGTTATTAAGAATGAAGGTAAAACACCTTCATTGACTGCTACTGACGCTGGTTATATAGGTCAGACTGCTGGCGGCGGT
CGTTATTGTGCTCTTACAGTTACAGGTACAAGCATTGCTTGCTCAATTAAGAATTCAAATGCAGATAAAGCAAATGGTAA
AACACTAACATTGAACCGTACAACTGAAGGTGTTTGGTCATGTGCTACAGGCGGTGGTTTAGACGCTAAATTTAAGCCTG
GAAGCTGTAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
61.765 |
99.27 |
0.613 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
52.593 |
98.54 |
0.518 |
| pilA | Acinetobacter baumannii strain A118 |
43.662 |
100 |
0.453 |
| pilA/pilA1 | Eikenella corrodens VA1 |
41.333 |
100 |
0.453 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.069 |
100 |
0.445 |
| pilA | Pseudomonas aeruginosa PAK |
38.217 |
100 |
0.438 |
| pilE | Neisseria gonorrhoeae MS11 |
37.975 |
100 |
0.438 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.736 |
100 |
0.438 |
| pilA2 | Legionella pneumophila str. Paris |
42.857 |
100 |
0.438 |
| comP | Acinetobacter baylyi ADP1 |
38.776 |
100 |
0.416 |
| pilA | Vibrio cholerae C6706 |
37.063 |
100 |
0.387 |
| pilA | Vibrio cholerae strain A1552 |
37.063 |
100 |
0.387 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
37.063 |
100 |
0.387 |