Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   A6J87_RS04005 Genome accession   NZ_CP020451
Coordinates   820527..821024 (-) Length   165 a.a.
NCBI ID   WP_080611610.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_259     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 815527..826024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J87_RS03985 (A6J87_03970) - 815555..817159 (-) 1605 WP_080611607.1 CTP synthase -
  A6J87_RS03990 (A6J87_03975) rpoE 817412..817987 (-) 576 WP_002885605.1 DNA-directed RNA polymerase subunit delta -
  A6J87_RS03995 (A6J87_03980) tig 818145..819428 (-) 1284 WP_080611609.1 trigger factor -
  A6J87_RS04000 (A6J87_03985) - 819571..820413 (+) 843 WP_073689500.1 mechanosensitive ion channel family protein -
  A6J87_RS04005 (A6J87_03990) comX/sigX 820527..821024 (-) 498 WP_080611610.1 sigma factor Regulator
  A6J87_RS04010 (A6J87_03995) tnpA 821577..821855 (-) 279 Protein_778 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20052.85 Da        Isoelectric Point: 4.8691

>NTDB_id=223242 A6J87_RS04005 WP_080611610.1 820527..821024(-) (comX/sigX) [Streptococcus salivarius strain FDAARGOS_259]
MEQEVFVHAYEVVRPIVLKASRQYFIQLWDQADMEQEAMMTLYQLLEKFPELKSDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYIEISDIAFCLPNKELDAVDRLVYDEQLDAFRNQLSSEDVTKLDRLLAGECFRGRKKMIRELKFWMVDFDP
YNEDD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=223242 A6J87_RS04005 WP_080611610.1 820527..821024(-) (comX/sigX) [Streptococcus salivarius strain FDAARGOS_259]
ATGGAACAAGAAGTTTTTGTTCACGCATATGAAGTTGTAAGGCCGATTGTACTTAAGGCTAGTAGACAATATTTCATCCA
ACTTTGGGACCAAGCTGATATGGAGCAAGAAGCTATGATGACGCTTTATCAGCTTTTAGAAAAGTTTCCTGAATTAAAGT
CTGATGATGATAAGTTACGGCGATATTTTAAAACGAAATTTAGGAATAGACTTAATGATGAGGTTAGAAGGCAGGAGTCT
GTAAAACGACAAGCTAATCGACAATGTTATATCGAAATTTCAGATATTGCTTTTTGTCTCCCGAATAAAGAGTTAGATGC
GGTAGATAGACTTGTTTATGATGAGCAGCTTGATGCTTTCCGTAATCAGTTGTCTTCGGAAGATGTTACTAAGTTAGACC
GTCTGCTAGCTGGAGAATGTTTTAGAGGTCGAAAAAAGATGATCAGGGAGTTAAAATTTTGGATGGTAGATTTTGATCCT
TATAACGAAGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.