Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   CR922_RS08570 Genome accession   NZ_CP025400
Coordinates   1618551..1619048 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain EPS     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613551..1624048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR922_RS08550 - 1613591..1615195 (-) 1605 WP_002949230.1 CTP synthase -
  CR922_RS08555 rpoE 1615446..1616027 (-) 582 WP_011225340.1 DNA-directed RNA polymerase subunit delta -
  CR922_RS08560 tig 1616185..1617468 (-) 1284 WP_011225339.1 trigger factor -
  CR922_RS08565 - 1617609..1618451 (+) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  CR922_RS08570 comX 1618551..1619048 (-) 498 WP_002949220.1 sigma factor Regulator
  CR922_RS08575 - 1619340..1619444 (-) 105 Protein_1607 IS200/IS605 family transposase -
  CR922_RS08580 - 1619802..1620266 (+) 465 Protein_1608 transposase family protein -
  CR922_RS08585 - 1620526..1621716 (-) 1191 WP_002949216.1 SAM-dependent methyltransferase -
  CR922_RS08590 - 1621819..1622145 (-) 327 WP_082302972.1 M20/M25/M40 family metallo-hydrolase -
  CR922_RS08595 - 1622334..1622656 (+) 323 Protein_1611 transposase -
  CR922_RS08600 - 1622741..1622962 (-) 222 WP_002948904.1 DUF4649 family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=218613 CR922_RS08570 WP_002949220.1 1618551..1619048(-) (comX) [Streptococcus thermophilus strain EPS]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=218613 CR922_RS08570 WP_002949220.1 1618551..1619048(-) (comX) [Streptococcus thermophilus strain EPS]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCATTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.