Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   CW339_RS00780 Genome accession   NZ_CP025216
Coordinates   138170..138667 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain DGCC 7710     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 133170..143667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW339_RS00750 (CW339_00750) - 134238..134459 (+) 222 WP_002948904.1 DUF4649 family protein -
  CW339_RS00755 (CW339_00755) - 134544..134860 (-) 317 Protein_112 transposase -
  CW339_RS00760 (CW339_00760) - 135056..135400 (+) 345 WP_023909336.1 aminoacylase -
  CW339_RS00765 (CW339_00765) - 135503..136693 (+) 1191 WP_024704158.1 cyclopropane-fatty-acyl-phospholipid synthase family protein -
  CW339_RS00770 (CW339_00770) - 136952..137416 (-) 465 Protein_115 transposase family protein -
  CW339_RS00775 (CW339_00775) - 137774..137863 (+) 90 Protein_116 IS200/IS605 family transposase -
  CW339_RS00780 (CW339_00780) comX 138170..138667 (+) 498 WP_002949220.1 sigma factor Regulator
  CW339_RS00785 (CW339_00785) - 138767..139609 (-) 843 WP_024704159.1 mechanosensitive ion channel family protein -
  CW339_RS00790 (CW339_00790) tig 139751..141034 (+) 1284 WP_011680653.1 trigger factor -
  CW339_RS00795 (CW339_00795) rpoE 141192..141767 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  CW339_RS00800 (CW339_00800) - 142018..143622 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=217535 CW339_RS00780 WP_002949220.1 138170..138667(+) (comX) [Streptococcus thermophilus strain DGCC 7710]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=217535 CW339_RS00780 WP_002949220.1 138170..138667(+) (comX) [Streptococcus thermophilus strain DGCC 7710]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.