Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SMA_0275 Genome accession   HE613569
Coordinates   283912..284397 (+) Length   161 a.a.
NCBI ID   CCF01566.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 278912..289397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0275 comX/sigX 283912..284397 (+) 486 CCF01566.1 Competence-specific sigma factor ComX Regulator
  SMA_0276 - 284537..284803 (+) 267 CCF01567.1 ACT domain containing transcriptional regulators, related to GcvR of E.coli -
  SMA_0277 - 284815..286152 (+) 1338 CCF01568.1 Hypothetical protein -
  SMA_0278 gpmB 286377..287081 (+) 705 CCF01569.1 Phosphoglycerate mutase family -
  SMA_0279 vanYB 287065..287838 (+) 774 CCF01570.1 D-alanyl-D-alanine carboxypeptidase -
  SMA_0280 acmA 287835..288416 (+) 582 CCF01571.1 putative N-acetyl-muramidase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19503.57 Da        Isoelectric Point: 9.3936

>NTDB_id=20332 SMA_0275 CCF01566.1 283912..284397(+) (comX/sigX) [Streptococcus macedonicus ACA-DC 198]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPNLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQTRFLDLADYVAYQERLQAVEQRLGVGAKEKLAKVMRGERFEGKKAFLTKIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=20332 SMA_0275 CCF01566.1 283912..284397(+) (comX/sigX) [Streptococcus macedonicus ACA-DC 198]
ATGATGGAAACATTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCTAATTTGTTGCAGG
ACGACTTGTCTCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAACAAGGTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTAGGAGTGGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGGAAAAAGGCCTTCTTGACTAAAATTGAGCCCTTCTTTAATGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.