Detailed information NTG0193345

Bioinformatically predicted

Overview

• Name: pilA/pilAI
• Type: Machinery gene
• Locus tag: XJ27_RS21970
• Genome accession: NZ_CP016878
• Coordinates: 4896378..4896785 (+)
• Length: 135 a.a.
• NCBI ID: WP_074058081.1
• Uniprot ID: -
• Organism: Xanthomonas hortorum strain B07-007
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	4896880..4897842	4896378..4896785	flank	95

Gene organization within MGE regions

Location: 4896378..4897842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XJ27_RS21970 (XJ27_20985)	pilA/pilAI	4896378..4896785 (+)	408	WP_074058081.1	pilin	Machinery gene
XJ27_RS21975 (XJ27_20990)	-	4896880..4897842 (-)	963	WP_006448937.1	IS1595 family transposase	-

Sequence

Protein

• Length: 135 a.a.
• Molecular weight: 13943.99 Da
• Isoelectric Point: 8.4717

>NTDB_id=193345 XJ27_RS21970 WP_074058081.1 4896378..4896785(+) (pilA/pilAI) [Xanthomonas hortorum strain B07-007]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYVVKSQAASALAEITPGKVGFEQATNEGKTPSTAAADAGYIGVGGTTS
YCTVTVTATTIVCATRGGNATKFNGKNLTWTRDAATGLWSCGSDLDAKYKPGKCT

Nucleotide

• Length: 408 bp

>NTDB_id=193345 XJ27_RS21970 WP_074058081.1 4896378..4896785(+) (pilA/pilAI) [Xanthomonas hortorum strain B07-007]
ATGAAGAAGCAACAAGGTTTTACGCTGATCGAACTGATGATCGTTGTGGCGATTATCGCAATTCTGGCTGCTATCGCGCT
GCCTGCGTACCAGGACTACGTGGTCAAGTCGCAAGCAGCATCTGCTCTTGCTGAGATCACTCCCGGAAAGGTTGGCTTCG
AGCAGGCGACTAACGAGGGCAAGACACCAAGCACTGCTGCGGCTGATGCAGGCTACATTGGTGTTGGCGGTACTACCTCC
TACTGCACCGTAACTGTGACCGCTACTACCATCGTCTGCGCTACAAGAGGCGGGAATGCAACAAAATTCAACGGCAAGAA
TTTGACCTGGACTCGTGATGCTGCGACTGGTCTTTGGAGCTGCGGGTCTGATCTCGATGCTAAGTACAAGCCCGGTAAGT
GCACCTAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (35-135)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA/pilAI	Pseudomonas stutzeri DSM 10701	68.148	100	0.681
pilA/pilAII	Pseudomonas stutzeri DSM 10701	62.406	98.519	0.615
pilA	Pseudomonas aeruginosa PAK	44.667	100	0.496
pilA	Acinetobacter baumannii strain A118	44.755	100	0.474
pilA	Vibrio parahaemolyticus RIMD 2210633	44.697	97.778	0.437
comP	Acinetobacter baylyi ADP1	40.136	100	0.437
pilA	Ralstonia pseudosolanacearum GMI1000	35.443	100	0.415
pilE	Neisseria gonorrhoeae MS11	35.032	100	0.407
pilA	Vibrio cholerae C6706	38.028	100	0.4
pilA	Vibrio cholerae strain A1552	38.028	100	0.4
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	38.028	100	0.4
pilA2	Legionella pneumophila str. Paris	38.686	100	0.393
pilA2	Legionella pneumophila strain ERS1305867	38.686	100	0.393